RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 KITP10721 976 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 THRAP10827 490 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TCF4P15884 667 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 HMGA1P17096 107 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 BPIP17213 487 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ITIH1P19827 911 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CDH3P22223 829 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 S100A1P23297 94 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 PSMA2P25787 234 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 DCKP27707 260 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 MSX1P28360 303 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 POLR2BP30876 1174 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 SFNP31947 248 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 GARSP41250 739 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 MAGEA12P43365 314 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 RXRGP48443 463 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ENTPD1P49961 510 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 NUDT2P50583 147 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 THOP1P52888 689 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 AP3M2P53677 418 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 MAPK10P53779 464 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 PEX3P56589 373 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 NXPH1P58417 271 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 MYL6P60660 151 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ABCE1P61221 599 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 OSTNP61366 133 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 NAA20P61599 178 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 YWHAEP62258 255 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 CDKL1Q00532 357 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 OGDHQ02218 1023 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 NIPAL4Q0D2K0 466 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 FOXD4Q12950 439 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 ZBTB17Q13105 803 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CAPSQ13938 189 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TFDP2Q14188 446 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 DPYSL3Q14195 570 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ELOAQ14241 798 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 FGL2Q14314 439 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 C16orf72Q14CZ0 275 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 MAPRE2Q15555 327 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 INPP5JQ15735 1006 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 CLPPQ16740 277 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 CCDC153Q494R4 210 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ZBED5Q49AG3 693 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 FASTKD1Q53R41 847 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 RALGPS1Q5JS13 557 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 C6orf52Q5T4I8 152 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TDRD10Q5VZ19 366 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 KIAA0895LQ68EN5 471 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 HIST2H2BDQ6DRA6 164 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 OVOS1Q6IE37 1185 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 KRT80Q6KB66 452 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 GUSBP11Q6P575 273 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 SLC39A4Q6P5W5 647 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 DCUN1D2Q6PH85 259 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 DARS2Q6PI48 645 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 DCDC5Q6ZRR9 648 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 LINC00299Q6ZSB3 139 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 B3GNT8Q7Z7M8 397 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 HPS6Q86YV9 775 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 RFX6Q8HWS3 928 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 IGDCC3Q8IVU1 814 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CDKL3Q8IVW4 592 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 CTAGE3PQ8IX95 158 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 SLC15A3Q8IY34 581 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 NDUFAF2Q8N183 169 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TMEM130Q8N3G9 435 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 SLC25A45Q8N413 288 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 OXR1Q8N573 874 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CPSF7Q8N684 471 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 TRIML2Q8N7C3 387 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CNTD1Q8N815 330 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TMEM102Q8N9M5 508 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 DDHD1Q8NEL9 900 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 RP9Q8TA86 221 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 RDH11Q8TC12 318 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 PNPT1Q8TCS8 783 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 GIPC3Q8TF64 312 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TRUB1Q8WWH5 349 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 POMGNT1Q8WZA1 660 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CDKL2Q92772 493 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 C18orf25Q96B23 403 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 CCDC127Q96BQ5 260 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 EFHD2Q96C19 240 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 FAF2Q96CS3 445 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ASB9Q96DX5 294 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CFAP36Q96G28 342 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 FUBP3Q96I24 572 aaKnown RBP eCLIP4.11□□□□□ -1.75
LIG3-211ENST00000588713 AGAP3Q96P47 875 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 SORT1Q99523 831 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TUBA1CQ9BQE3 449 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 PSD2Q9BQI7 771 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ADPGKQ9BRR6 497 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TRIM56Q9BRZ2 755 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 YIPF2Q9BWQ6 316 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TDRD1Q9BXT4 1180 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 KRTAP17-1Q9BYP8 105 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TRIM8Q9BZR9 551 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 IMPG2Q9BZV3 1241 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms