RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FAM8A1Q9UBU6 413 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 ZNF180Q9UJW8 692 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 CORO1CQ9ULV4 474 aaPredicted RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 PSMD13Q9UNM6 376 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 RUVBL2Q9Y230 463 aaKnown RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 VPS9D1Q9Y2B5 631 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 COMMD10Q9Y6G5 202 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 PCM1Q15154 2024 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 KNTC1P50748 2209 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 HEATR5BQ9P2D3 2071 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 KRT87PA6NCN2 255 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 H3BMM5 538 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 QSOX1O00391 747 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 LIN7AO14910 233 aaPredicted RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 PPM1DO15297 605 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 PHGDHO43175 533 aaKnown RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 RFPL1O75677 317 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 DKK1O94907 266 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 MATN4O95460 622 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 FTH1P02794 183 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 TUBBP07437 444 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 GSTM1P09488 218 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 SLC35E2BP0CK96 405 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 CTSEP14091 401 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 ZNF37AP17032 561 aaPredicted RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 XRCC1P18887 633 aaPredicted RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 ATP5DP30049 168 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 PHBP35232 272 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 PPARGP37231 505 aaPredicted RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 GSTM4Q03013 218 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 RPA4Q13156 261 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 BOP1Q14137 746 aaKnown RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 NR1D2Q14995 579 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 BRD3Q15059 726 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 RASA2Q15283 850 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 RPE65Q16518 533 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 ZXDCQ2QGD7 858 aaPredicted RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 CCSMST1Q4G0I0 132 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 PLEKHS1Q5SXH7 462 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 GRTP1Q5TC63 336 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 PTRHD1Q6GMV3 140 aaKnown RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 FAM45BPQ6NSW5 357 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 FBXO38Q6PIJ6 1188 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 PIWIL4Q7Z3Z4 852 aaKnown RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 PDZD3Q86UT5 571 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 TDRPQ86YL5 185 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 NAXDQ8IW45 347 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 CPNE9Q8IYJ1 553 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 ARL14Q8N4G2 192 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 ZBTB2Q8N680 514 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 FAM45AQ8TCE6 357 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 EPS8L3Q8TE67 593 aaKnown RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 UBLCP1Q8WVY7 318 aaPredicted RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 ELMO1Q92556 727 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 MRRFQ96E11 262 aaKnown RBP9.08□□□□□ -0.96
VPS35-211ENST00000569950 UBXN10Q96LJ8 280 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 TTC1Q99614 292 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 TMEM109Q9BVC6 243 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 VWA7Q9Y334 891 aa9.08□□□□□ -0.96
VPS35-211ENST00000569950 NCOR2Q9Y618 2525 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 EXOC1LA0A1B0GW35 172 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 KLHL33A6NCF5 533 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 B4DGG1 531 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 POC1B-GALNT4F8VUJ3 575 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 SLC30A4O14863 429 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 FLRT2O43155 660 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 FOXD2O60548 495 aaPredicted RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 TOP3BO95985 862 aaKnown RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 ANXA6P08133 673 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 MTHFD1P11586 935 aaKnown RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 IDSP22304 550 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 MCM3P25205 808 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 GRK6P43250 576 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 FASLGP48023 281 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 POU4F1Q01851 419 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 ZNF844Q08AG5 666 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 HSPA14Q0VDF9 509 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 DNAJC3Q13217 504 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 SEPT7Q16181 437 aaKnown RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 KLHL38Q2WGJ6 581 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 C14orf28Q4W4Y0 310 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 TNFAIP8L3Q5GJ75 292 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 EEF1AKMT2Q5JPI9 291 aaKnown RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 PPM1JQ5JR12 505 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 PERM1Q5SV97 790 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 ZCCHC8Q6NZY4 707 aaKnown RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 GUSBP11Q6P575 273 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 CLEC14AQ86T13 490 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 GKN2Q86XP6 184 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 CENPLQ8N0S6 344 aaPredicted RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 GPATCH11Q8N954 259 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 ZDHHC1Q8WTX9 485 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 EEF1AKMT1Q8WVE0 214 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 CDKL2Q92772 493 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 INPP5DQ92835 1189 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 PDLIM5Q96HC4 596 aaKnown RBP9.07□□□□□ -0.96
VPS35-211ENST00000569950 ELMO2Q96JJ3 720 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 GPR78Q96P69 363 aa9.07□□□□□ -0.96
VPS35-211ENST00000569950 PANX3Q96QZ0 392 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms