RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MGAT5Q09328 741 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 BIRC2Q13490 618 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 GPR18Q14330 331 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 RBM20Q5T481 1227 aaKnown RBP19.1■□□□□ 0.65
CLN3-225ENST00000566824 USP53Q70EK8 1073 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 TMPRSS7Q7RTY8 843 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 ERMP1Q7Z2K6 904 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 TRIM48Q8IWZ4 208 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 PALM2Q8IXS6 379 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 LMNTD2Q8IXW0 634 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 GIMAP7Q8NHV1 300 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 CXorf40BQ96DE9 158 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 SCNM1Q9BWG6 230 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 ABCG4Q9H172 646 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 LRRC4CQ9HCJ2 640 aa19.1■□□□□ 0.65
CLN3-225ENST00000566824 MT-CO3P00414 261 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 GSTM1P09488 218 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 ACADLP28330 430 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 CSF2RBP32927 897 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 GSTM4Q03013 218 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 HSPA14Q0VDF9 509 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 SYTL3Q4VX76 610 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 TEX35Q5T0J7 233 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 TMEM26Q6ZUK4 368 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 B3GNT8Q7Z7M8 397 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 PDZD3Q86UT5 571 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 ACVR1CQ8NER5 493 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 NDNQ99608 321 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 SLC38A3Q99624 504 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 NUDT22Q9BRQ3 303 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 FOXP3Q9BZS1 431 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 PHACTR1Q9C0D0 580 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 RDH14Q9HBH5 336 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 KCNK4Q9NYG8 393 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 OGFRQ9NZT2 677 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 TMEM9Q9P0T7 183 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 TSR3Q9UJK0 312 aaKnown RBP19.09■□□□□ 0.65
CLN3-225ENST00000566824 NFU1Q9UMS0 254 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 PCDHB1Q9Y5F3 818 aa19.09■□□□□ 0.65
CLN3-225ENST00000566824 TCRBV9S1A1TA0A576 114 aa19.08■□□□□ 0.65
CLN3-225ENST00000566824 HOXB3P14651 431 aaPredicted RBP19.08■□□□□ 0.65
CLN3-225ENST00000566824 GPR3P46089 330 aa19.08■□□□□ 0.65
CLN3-225ENST00000566824 CLCN7P51798 805 aa19.08■□□□□ 0.65
CLN3-225ENST00000566824 RPA4Q13156 261 aa19.08■□□□□ 0.65
CLN3-225ENST00000566824 KYNUQ16719 465 aa19.08■□□□□ 0.65
CLN3-225ENST00000566824 ZNF574Q6ZN55 896 aaPredicted RBP19.08■□□□□ 0.65
CLN3-225ENST00000566824 C3orf62Q6ZUJ4 267 aa19.08■□□□□ 0.65
CLN3-225ENST00000566824 SIDT2Q8NBJ9 832 aaKnown RBP19.08■□□□□ 0.65
CLN3-225ENST00000566824 AARSD1Q9BTE6 412 aaKnown RBP19.08■□□□□ 0.65
CLN3-225ENST00000566824 POT1Q9NUX5 634 aa19.08■□□□□ 0.65
CLN3-225ENST00000566824 NINJ2Q9NZG7 142 aa19.08■□□□□ 0.65
CLN3-225ENST00000566824 RUVBL2Q9Y230 463 aaKnown RBP19.08■□□□□ 0.65
CLN3-225ENST00000566824 PFDN6O15212 129 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 CDK4P11802 303 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 CHRM3P20309 590 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 MAPK9P45984 424 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 CDKN2DP55273 166 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 TARDBPQ13148 414 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-225ENST00000566824 GSPT2Q8IYD1 628 aaKnown RBP19.07■□□□□ 0.64
CLN3-225ENST00000566824 SLC22A15Q8IZD6 547 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 DCBLD1Q8N8Z6 715 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 OR5AR1Q8NGP9 310 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 TFGQ92734 400 aaPredicted RBP19.07■□□□□ 0.64
CLN3-225ENST00000566824 GFM1Q96RP9 751 aaKnown RBP19.07■□□□□ 0.64
CLN3-225ENST00000566824 VPS9D1Q9Y2B5 631 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 CHD8Q9HCK8 2581 aa19.07■□□□□ 0.64
CLN3-225ENST00000566824 LILRA5A6NI73 299 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 D6RAR5 112 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 SLCO2B1O94956 709 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 FAM153BP0C7A2 387 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 TPBGLP0DKB5 382 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 TYRP1P17643 537 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 MPSTP25325 297 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 CD151P48509 253 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 ABRQ12979 859 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 PRKG2Q13237 762 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 SPIDRQ14159 915 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 GBX1Q14549 363 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 EFTUD2Q15029 972 aaKnown RBP eCLIP19.06■□□□□ 0.643e-6■■■■□ 22
CLN3-225ENST00000566824 FAM153CQ494X1 144 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 ACSBG2Q5FVE4 666 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 KIAA0408Q6ZU52 694 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 PIM3Q86V86 326 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 TMPRSS12Q86WS5 348 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 IFT20Q8IY31 132 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 TMEM159Q96B96 161 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 ATXN7L3BQ96GX2 97 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 PANX3Q96QZ0 392 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 FERD3LQ96RJ6 166 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 FMO2Q99518 471 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 GPR21Q99679 349 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 MCMBPQ9BTE3 642 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 TSSK1BQ9BXA7 367 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 SEMA6CQ9H3T2 930 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 UCK1Q9HA47 277 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 LATS2Q9NRM7 1088 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 ZFATQ9P243 1243 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 SLC24A2Q9UI40 661 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 CLCA2Q9UQC9 943 aa19.06■□□□□ 0.64
CLN3-225ENST00000566824 A0A1W2PNU3 283 aaPredicted RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms