RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 SPC24Q8NBT2 197 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 DEFB124Q8NES8 71 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 OR8K1Q8NGG5 319 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 GANCQ8TET4 914 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 WFIKKN2Q8TEU8 576 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 DNASE2BQ8WZ79 361 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RAPGEF5Q92565 580 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 HSPH1Q92598 858 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 VCPIP1Q96JH7 1222 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 HERPUD2Q9BSE4 406 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 NUP58Q9BVL2 599 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 NUP85Q9BW27 656 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 GTPBP2Q9BX10 602 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 TM6SF2Q9BZW4 377 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TRIM5Q9C035 493 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 REXO4Q9GZR2 422 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 PABPC3Q9H361 631 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 LRRC19Q9H756 370 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 C10orf88Q9H8K7 445 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 NHEJ1Q9H9Q4 299 aaPredicted RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 PARVAQ9NVD7 372 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 TMEM248Q9NWD8 314 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RRN3Q9NYV6 651 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 GPRC5BQ9NZH0 403 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 FEZ2Q9UHY8 353 aaPredicted RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 GMEB2Q9UKD1 530 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 RAB23Q9ULC3 237 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 ITM2BQ9Y287 266 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 BTBD3Q9Y2F9 522 aa4.28□□□□□ -1.72
SPG11-211ENST00000558561 REXO2Q9Y3B8 237 aaKnown RBP4.28□□□□□ -1.72
SPG11-211ENST00000558561 GOLGA4Q13439 2230 aaKnown RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 EDDM13A0A1B0GTR0 161 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SPAARA0A1B0GVQ0 90 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 A0A1W2PR77 199 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 ZNF785A8K8V0 405 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 E9PLN8 166 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 KPNA3O00505 521 aaPredicted RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 SLC30A4O14863 429 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SCAMP1O15126 338 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SLC31A1O15431 190 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 BUB1O43683 1085 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SH3BP5O60239 455 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 PIGNO95427 931 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SEMA4FO95754 770 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 PAK4O96013 591 aaPredicted RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 IGLV3-19P01714 112 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 DNTTP04053 509 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 ACADMP11310 421 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 PRLRP16471 622 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 GJC1P36383 396 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SSR1P43307 286 aaKnown RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 MARCKSL1P49006 195 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 AGFG1P52594 562 aaKnown RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 SNX16P57768 344 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 MAXP61244 160 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 ST8SIA6P61647 398 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SLC25A11Q02978 314 aaKnown RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 SLC10A7Q0GE19 358 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SCAPQ12770 1279 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 DPYSQ14117 519 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 MESDQ14696 234 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 STARD3Q14849 445 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 POLD3Q15054 466 aaPredicted RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 MYLK3Q32MK0 819 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 BEAN1Q3B7T3 259 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 AASDHQ4L235 1098 aaPredicted RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 CARD16Q5EG05 197 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 KHDC1LQ5JSQ8 128 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 PIP5KL1Q5T9C9 394 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 LYSMD4Q5XG99 296 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 B3GNTL1Q67FW5 361 aaPredicted RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 SEL1L3Q68CR1 1132 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SPECC1LQ69YQ0 1117 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 C22orf39Q6P5X5 142 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 LRRC31Q6UY01 552 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 TRMT11Q7Z4G4 463 aaKnown RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 SETD3Q86TU7 594 aaPredicted RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 GATAD2AQ86YP4 633 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 CAMK1DQ8IU85 385 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 TMEM139Q8IV31 216 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SFTPA2Q8IWL1 248 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 TMEM132CQ8N3T6 1108 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 PQLC3Q8N755 202 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 PNPLA1Q8N8W4 532 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 PDPRQ8NCN5 879 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 CPEB3Q8NE35 698 aaKnown RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 SNX19Q92543 992 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 SYN2Q92777 582 aaPredicted RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 EXOC4Q96A65 974 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 NTAN1Q96AB6 310 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 TBC1D31Q96DN5 1066 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 LRIG1Q96JA1 1093 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 BMFQ96LC9 184 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 OMDQ99983 421 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 VKORC1Q9BQB6 163 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 PDFQ9HBH1 243 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 TM9SF3Q9HD45 589 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 MBNL1Q9NR56 388 aaKnown RBP4.27□□□□□ -1.73
SPG11-211ENST00000558561 VPS45Q9NRW7 570 aa4.27□□□□□ -1.73
SPG11-211ENST00000558561 ABHD10Q9NUJ1 306 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms