RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 ZCCHC7Q8N3Z6 543 aaKnown RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 SLC13A3Q8WWT9 602 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 IGSF8Q969P0 613 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 TBC1D20Q96BZ9 403 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 CEP295NLQ96MC4 621 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 AMBRA1Q9C0C7 1298 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 FBXO8Q9NRD0 319 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 ADGRE2Q9UHX3 823 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 EIF2B4Q9UI10 523 aaKnown RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 GABRQQ9UN88 632 aa16.04■□□□□ 0.16
SHMT2-232ENST00000557487 EIF3LQ9Y262 564 aaKnown RBP16.04■□□□□ 0.16
SHMT2-232ENST00000557487 PLXNA3P51805 1871 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 TRIP12Q14669 1992 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-232ENST00000557487 GBF1Q92538 1859 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 ELOVL7A1L3X0 281 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 OTCP00480 354 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 IL6P05231 212 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 HTR1AP08908 422 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 PCMT1P22061 227 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 HTR1BP28222 390 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 OR1E1P30953 314 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 CXCR4P61073 352 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 RING1Q06587 406 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 CYP4F3Q08477 520 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 SELPLGQ14242 412 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 KIAA0040Q15053 153 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 NR6A1Q15406 480 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 CTF1Q16619 201 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 DGUOKQ16854 277 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 MORN1Q5T089 497 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 IL27RAQ6UWB1 636 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 SOCS4Q8WXH5 440 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 FIG4Q92562 907 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 LINGO1Q96FE5 620 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 TRIT1Q9H3H1 467 aaKnown RBP16.03■□□□□ 0.16
SHMT2-232ENST00000557487 ACTL8Q9H568 366 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 PIF1Q9H611 641 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 ASIC5Q9NY37 505 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 IL37Q9NZH6 218 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 LIMD1Q9UGP4 676 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 ERVW-1Q9UQF0 538 aa16.03■□□□□ 0.16
SHMT2-232ENST00000557487 MYO16Q9Y6X6 1858 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 KRBA1A5PL33 1030 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 NCF1BA6NI72 391 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-232ENST00000557487 NCF1CA8MVU1 366 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-232ENST00000557487 ENPP3O14638 875 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 RECQL5O94762 991 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-232ENST00000557487 IGLV3-27P01718 113 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 ESR1P03372 595 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 S100BP04271 92 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-232ENST00000557487 NCF1P14598 390 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-232ENST00000557487 IDUAP35475 653 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 NRIP1P48552 1158 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 TMED10P49755 219 aaKnown RBP16.02■□□□□ 0.16
SHMT2-232ENST00000557487 HK3P52790 923 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 MAPK10P53779 464 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 MLLT10P55197 1068 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 AQP6Q13520 282 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 CYP2A13Q16696 494 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 MEP1AQ16819 746 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 AP5B1Q2VPB7 878 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 ATG9BQ674R7 924 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 RAP1GAP2Q684P5 730 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 IL31Q6EBC2 164 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 SCIMPQ6UWF3 145 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 GLT6D1Q7Z4J2 308 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 ADAMTSL2Q86TH1 951 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 STK40Q8N2I9 435 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 OR7A2PQ8NGA2 310 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 OR4K2Q8NGD2 314 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 CD200R1Q8TD46 325 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 PXYLP1Q8TE99 480 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 ARMC5Q96C12 935 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 NSMCE3Q96MG7 304 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 RPRD1AQ96P16 312 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-232ENST00000557487 MTRRQ9UBK8 725 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 TPRKBQ9Y3C4 175 aa16.02■□□□□ 0.16
SHMT2-232ENST00000557487 SLC28A1O00337 649 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 MUSKO15146 869 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 RGS14O43566 566 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 CAPN1P07384 714 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 PCNAP12004 261 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 LPOP22079 712 aaPredicted RBP16.02■□□□□ 0.15
SHMT2-232ENST00000557487 SOX11P35716 441 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 KPNA1P52294 538 aaPredicted RBP16.02■□□□□ 0.15
SHMT2-232ENST00000557487 PURAQ00577 322 aaKnown RBP16.02■□□□□ 0.15
SHMT2-232ENST00000557487 MVKQ03426 396 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 IMPG1Q17R60 797 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 PRAMEF19Q5SWL8 479 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 LETMD1Q6P1Q0 360 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 METTL2BQ6P1Q9 378 aaKnown RBP16.02■□□□□ 0.15
SHMT2-232ENST00000557487 GPR149Q86SP6 731 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 RAET1EQ8TD07 263 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 FAM162AQ96A26 154 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 MAGEH1Q9H213 219 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 SMURF2Q9HAU4 748 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 TMED5Q9Y3A6 229 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 NEUROG3Q9Y4Z2 214 aa16.02■□□□□ 0.15
SHMT2-232ENST00000557487 MRPL42Q9Y6G3 142 aaKnown RBP16.02■□□□□ 0.15
SHMT2-232ENST00000557487 FAM220BPB1ANY3 271 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms