RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 B4DGG1 531 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 SNX2O60749 519 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 CBFA2T3O75081 653 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 GPC4O75487 556 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 VIPP01282 170 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 MSH2P43246 934 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 MPP1Q00013 466 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 BOP1Q14137 746 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 BRD3Q15059 726 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 TRIP6Q15654 476 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 CTSL3PQ5NE16 218 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 N4BP2L1Q5TBK1 243 aaPredicted RBP17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 KCTD16Q68DU8 428 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 KLHL35Q6PF15 583 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 CNSTQ6PJW8 725 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 SLC22A15Q8IZD6 547 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 NAGSQ8N159 534 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 ZBTB2Q8N680 514 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 CCL4L1Q8NHW4 92 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 PKNOX2Q96KN3 472 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 RBBP8Q99708 897 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 DPYSL5Q9BPU6 564 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 GULP1Q9UBP9 304 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 ANGPTL2Q9UKU9 493 aa17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 APOBEC2Q9Y235 224 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-210ENST00000540931 PIKFYVEQ9Y2I7 2098 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 EXOC1LA0A1B0GW35 172 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 RHPN2P1A8MT19 583 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 TRIM38O00635 465 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 CCR7P32248 378 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 CCNFP41002 786 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 LIMK2P53671 638 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 EPHA4P54764 986 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 SHC2P98077 582 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 HHEXQ03014 270 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 HSPA14Q0VDF9 509 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 DNAJC3Q13217 504 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 PDAP1Q13442 181 aaKnown RBP17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 KRT33BQ14525 404 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 ZNF658BQ4V348 819 aaPredicted RBP17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 CAPRIN2Q6IMN6 1127 aaKnown RBP17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 UNC5DQ6UXZ4 953 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 CROCCP2Q86T23 111 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 PDZD3Q86UT5 571 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 RAB42Q8N4Z0 105 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 GPATCH11Q8N954 259 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 UBLCP1Q8WVY7 318 aaPredicted RBP17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 ANKRD7Q92527 254 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 OR52A5Q9H2C5 316 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 PRDM8Q9NQV8 689 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC24A2Q9UI40 661 aa17.14■□□□□ 0.33
CLSTN3-210ENST00000540931 CCDC189A1A4V9 331 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 CCDC151A5D8V7 595 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 NOBOXO60393 691 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 CELA2BP08218 269 aaPredicted RBP17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 FAM153BP0C7A2 387 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 MPC1LP0DKB6 136 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC26A3P40879 764 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 FAM153CQ494X1 144 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 HECTD2Q5U5R9 776 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC35F3Q8IY50 421 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 TBC1D21Q8IYX1 336 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 ARL14Q8N4G2 192 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 MREGQ8N565 214 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 NKAPQ8N5F7 415 aaKnown RBP17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 AENQ8WTP8 325 aaKnown RBP17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC44A1Q8WWI5 657 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 TFGQ92734 400 aaPredicted RBP17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 MTBPQ96DY7 904 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 C12orf66Q96MD2 445 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 GPR22Q99680 433 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 CPNE7Q9UBL6 633 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 PLEKHM1Q9Y4G2 1056 aa17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 PCYT1BQ9Y5K3 369 aaPredicted RBP17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 ZFC3H1O60293 1989 aaKnown RBP17.13■□□□□ 0.33
CLSTN3-210ENST00000540931 FAM95CA0A1B0GW59 222 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 PABPN1LA6NDY0 278 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 NIPSNAP2O75323 286 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 MTHFD1P11586 935 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 STMN1P16949 149 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 KCNA4P22459 653 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 RPL10P27635 214 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 GABRB3P28472 473 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 CRABP2P29373 138 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 CLCN7P51798 805 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 IL2P60568 153 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 GPLD1P80108 840 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 SLC29A2Q14542 456 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 GBX1Q14549 363 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 NR1D2Q14995 579 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 RASA2Q15283 850 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 ZNF789Q5FWF6 425 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 ZNF549Q6P9A3 640 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 ZNF438Q7Z4V0 828 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 PDLIM5Q96HC4 596 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 ELMO2Q96JJ3 720 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 MCMBPQ9BTE3 642 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 RAB11FIP5Q9BXF6 653 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 WWP1Q9H0M0 922 aa17.12■□□□□ 0.33
CLSTN3-210ENST00000540931 TRIT1Q9H3H1 467 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms