RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 C1QTNF1Q9BXJ1 281 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 API5Q9BZZ5 524 aaKnown RBP3.8□□□□□ -1.8
CD44-219ENST00000525685 RETREG1Q9H6L5 497 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 EPB41L5Q9HCM4 733 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 MMP25Q9NPA2 562 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 CD93Q9NPY3 652 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 SETD4Q9NVD3 440 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 MCM9Q9NXL9 1143 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 ZNF224Q9NZL3 707 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 TBC1D29Q9UFV1 150 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 DBNLQ9UJU6 430 aaKnown RBP3.8□□□□□ -1.8
CD44-219ENST00000525685 TMEM5Q9Y2B1 443 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 CMAHPQ9Y471 501 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 CLIC4Q9Y696 253 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 COL4A5P29400 1685 aa3.8□□□□□ -1.8
CD44-219ENST00000525685 SBF1O95248 1867 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 RTL9Q8NET4 1388 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 A0A1W2PQ09 198 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 MAGEA13PA6NCF6 341 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 LRRC72A6NJI9 287 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 ZBTB43O43298 467 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 PMS2P2O95744 297 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 AFPP02771 609 aaKnown RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 FGF3P11487 239 aaPredicted RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 ALDH1B1P30837 517 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 HOXD13P35453 343 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 PSMB10P40306 273 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 MSH2P43246 934 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 ZNF155Q12901 538 aaPredicted RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 AIMP2Q13155 320 aaKnown RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 GRAPQ13588 217 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 MEA1Q16626 185 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 CCDC96Q2M329 555 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 CCDC152Q4G0S7 254 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 TMEM35AQ53FP2 167 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 SZRD1Q7Z422 152 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 ARID3BQ8IVW6 561 aaPredicted RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 FOXRED2Q8IWF2 684 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 BEST3Q8N1M1 668 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 ZNF114Q8NC26 417 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 HJURPQ8NCD3 748 aaPredicted RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 GRAPLQ8TC17 118 aaPredicted RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 FIG4Q92562 907 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 ARHGAP45Q92619 1136 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 FRAT1Q92837 279 aaPredicted RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 BICD1Q96G01 975 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 CCDC34Q96HJ3 373 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 SRSF8Q9BRL6 282 aaKnown RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 TMEM39BQ9GZU3 492 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 UBTD1Q9HAC8 227 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 PCDH9Q9HC56 1237 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 NSMCE4AQ9NXX6 385 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 UBA2Q9UBT2 640 aaPredicted RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 ZNF112Q9UJU3 913 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 ACSL5Q9ULC5 683 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 PADI1Q9ULC6 663 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 DICER1Q9UPY3 1922 aaKnown RBP3.79□□□□□ -1.8
CD44-219ENST00000525685 CCDC88AQ3V6T2 1871 aa3.79□□□□□ -1.8
CD44-219ENST00000525685 PDS5AQ29RF7 1337 aaKnown RBP3.78□□□□□ -1.8
CD44-219ENST00000525685 A8MZ25 164 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 CTDSP2O14595 271 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 MID1O15344 667 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 ICAM1P05362 532 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 CSH1P0DML2 217 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 CSH2P0DML3 217 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 GABRB1P18505 474 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 PON1P27169 355 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 ACTN2P35609 894 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 UBA7P41226 1012 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 GARSP41250 739 aaKnown RBP3.78□□□□□ -1.8
CD44-219ENST00000525685 SREBF2Q12772 1141 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 KCNC3Q14003 757 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 PCGF3Q3KNV8 242 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 RABL6Q3YEC7 729 aaPredicted RBP3.78□□□□□ -1.8
CD44-219ENST00000525685 DUSP28Q4G0W2 176 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 C18orf63Q68DL7 685 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 JADE1Q6IE81 842 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 UNQ6126/PRO20091Q6UXV3 157 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 EPHX4Q8IUS5 362 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 MAP7D3Q8IWC1 876 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 EMC1Q8N766 993 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 MCUQ8NE86 351 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 OR2AK2Q8NG84 335 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 DUSP19Q8WTR2 217 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 OR2A14Q96R47 310 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 ANP32EQ9BTT0 268 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 C1QTNF4Q9BXJ3 329 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 HRH4Q9H3N8 390 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 BICC1Q9H694 974 aaKnown RBP3.78□□□□□ -1.8
CD44-219ENST00000525685 DNAJC18Q9H819 358 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 LTB4R2Q9NPC1 389 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 ARHGEF38Q9NXL2 777 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 PCDHGB4Q9UN71 923 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 ATP6V0A2Q9Y487 856 aa3.78□□□□□ -1.8
CD44-219ENST00000525685 ZNF646O15015 1829 aaPredicted RBP3.78□□□□□ -1.8
CD44-219ENST00000525685 ZNF541Q9H0D2 1346 aa3.77□□□□□ -1.81
CD44-219ENST00000525685 A8MV72 311 aaPredicted RBP3.77□□□□□ -1.81
CD44-219ENST00000525685 K7ENM7 598 aa3.77□□□□□ -1.81
CD44-219ENST00000525685 MAP2K7O14733 419 aa3.77□□□□□ -1.81
CD44-219ENST00000525685 SLC16A5O15375 505 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms