RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 TTC1Q99614 292 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 MAP3K3Q99759 626 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 SLC25A18Q9H1K4 315 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 STARD5Q9NSY2 213 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 SMARCAL1Q9NZC9 954 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 SEMA5BQ9P283 1151 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 IL17BQ9UHF5 180 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 KCND3Q9UK17 655 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 CROTQ9UKG9 612 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 PADI1Q9ULC6 663 aa13.33□□□□□ -0.28
TCOF1-215ENST00000515516 SCN8AQ9UQD0 1980 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 F8W8V4 182 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 MATN2O00339 956 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 QSOX1O00391 747 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 SGTAO43765 313 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 LIASO43766 372 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 AP2A2O94973 939 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 ZBTB11O95625 1053 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-215ENST00000515516 FOLR1P15328 257 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 CDKN1CP49918 316 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-215ENST00000515516 POLE2P56282 527 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 PPP1CAP62136 330 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 CDH17Q12864 832 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 RPA4Q13156 261 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 KCNAB2Q13303 367 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 KCNAB1Q14722 419 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 RPS6KA1Q15418 735 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 DEFB109BQ30KR1 87 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 CCDC89Q8N998 374 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 ATG4AQ8WYN0 398 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 RNF31Q96EP0 1072 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 RMDN2Q96LZ7 410 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 SRMSQ9H3Y6 488 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 COG4Q9H9E3 785 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 FANCEQ9HB96 536 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 FGF21Q9NSA1 209 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 PIH1D1Q9NWS0 290 aaKnown RBP13.32□□□□□ -0.28
TCOF1-215ENST00000515516 SOHLH2Q9NX45 425 aa13.32□□□□□ -0.28
TCOF1-215ENST00000515516 MGAQ8IWI9 3026 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 IGLV3-16A0A075B6K0 115 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 TRBV5-4A0A0C4DH59 114 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 CCDC78A2IDD5 438 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 HEATR9A2RTY3 570 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 GSAPA4D1B5 854 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 EBLN1P0CF75 366 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 ITGB6P18564 788 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 POLR2CP19387 275 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-215ENST00000515516 CDH3P22223 829 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 MSNP26038 577 aaKnown RBP13.31□□□□□ -0.28
TCOF1-215ENST00000515516 NSG1P42857 185 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 ARCN1P48444 511 aaKnown RBP13.31□□□□□ -0.28
TCOF1-215ENST00000515516 CD151P48509 253 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 TUBB4BP68371 445 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 TUBB2AQ13885 445 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 CRTC2Q53ET0 693 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-215ENST00000515516 LYPLAL1Q5VWZ2 237 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 ATG14Q6ZNE5 492 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 SLC13A5Q86YT5 568 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-215ENST00000515516 LILRA3Q8N6C8 439 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-215ENST00000515516 OR52K1Q8NGK4 314 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 OR8K5Q8NH50 307 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 APOBEC4Q8WW27 367 aaKnown RBP13.31□□□□□ -0.28
TCOF1-215ENST00000515516 TUBB2BQ9BVA1 445 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 MVB12BQ9H7P6 319 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 ETNK1Q9HBU6 452 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 TUBD1Q9UJT1 453 aa13.31□□□□□ -0.28
TCOF1-215ENST00000515516 GOLGA6L3A6NEY3 463 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 MROH6A6NGR9 719 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 ARHGAP6O43182 974 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 FTH1P02794 183 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 PRSS56P0CW18 603 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 PPARGP37231 505 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-215ENST00000515516 KPNA2P52292 529 aaKnown RBP13.3□□□□□ -0.28
TCOF1-215ENST00000515516 SNX1Q13596 522 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 ITIH4Q14624 930 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 DBN1Q16643 649 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 SYTL3Q4VX76 610 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 CCDC38Q502W7 563 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 PWWP2BQ6NUJ5 590 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 NLRP9Q7RTR0 991 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 HOOK3Q86VS8 718 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 TMEM126BQ8IUX1 230 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 PIANPQ8IYJ0 282 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 D2HGDHQ8N465 521 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 CLDN19Q8N6F1 224 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 PHC3Q8NDX5 983 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 C1orf54Q8WWF1 131 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 TFGQ92734 400 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-215ENST00000515516 LHX9Q9NQ69 397 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 RAB6BQ9NRW1 208 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 KCND1Q9NSA2 647 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 PAK5Q9P286 719 aa13.3□□□□□ -0.28
TCOF1-215ENST00000515516 MRPS18BQ9Y676 258 aaKnown RBP13.3□□□□□ -0.28
TCOF1-215ENST00000515516 PIPSLA2A3N6 862 aa13.29□□□□□ -0.28
TCOF1-215ENST00000515516 CCDC162PA2VCL2 907 aa13.29□□□□□ -0.28
TCOF1-215ENST00000515516 C21orf140B9A014 251 aa13.29□□□□□ -0.28
TCOF1-215ENST00000515516 LIN7AO14910 233 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-215ENST00000515516 NRDCO43847 1150 aa13.29□□□□□ -0.28
TCOF1-215ENST00000515516 CPNE3O75131 537 aaKnown RBP13.29□□□□□ -0.28
TCOF1-215ENST00000515516 NTRK1P04629 796 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms