RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 POLBP06746 335 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 CBSLP0DN79 551 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 PVRP15151 417 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 CBSP35520 551 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 HMGCLP35914 325 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 PER3P56645 1201 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 KRT33BQ14525 404 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 GSE1Q14687 1217 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 LDLRAP1Q5SW96 308 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 ZFYVE27Q5T4F4 411 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 GPRC6AQ5T6X5 926 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 C1orf189Q5VU69 101 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 ZNF385CQ66K41 422 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 MAP7D3Q8IWC1 876 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 TM9SF4Q92544 642 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 XPO4Q9C0E2 1151 aaKnown RBP19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 RTN4Q9NQC3 1192 aaKnown RBP19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 P4HTMQ9NXG6 502 aa19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 PTRH2Q9Y3E5 179 aaKnown RBP19.72■□□□□ 0.75
SQSTM1-215ENST00000514093 PDZD2O15018 2839 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 E7EQ34 232 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 CYP1A2P05177 515 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 PRDX3P30048 256 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 SPAM1P38567 509 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 HADHAP40939 763 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 HIF1AQ16665 826 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 SASS6Q6UVJ0 657 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 DDHD1Q8NEL9 900 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 ZFPM2Q8WW38 1151 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 RAPGEF5Q92565 580 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 RMDN2Q96LZ7 410 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 IP6K3Q96PC2 410 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 RNF157Q96PX1 679 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 DPH2Q9BQC3 489 aaPredicted RBP19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 ANO10Q9NW15 660 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 SEC16AO15027 2179 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 CCDC88CQ9P219 2028 aa19.71■□□□□ 0.75
SQSTM1-215ENST00000514093 MGAT4DA6NG13 374 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 BTN3A3O00478 584 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 E2F3O00716 465 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 SLC35G4P0C7Q5 338 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 MSH3P20585 1137 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 AKT1P31749 480 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 FOLR3P41439 243 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 SLC9A5Q14940 896 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 NPNTQ6UXI9 565 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 SLC25A41Q8N5S1 370 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 LILRA3Q8N6C8 439 aaPredicted RBP19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 PLD5Q8N7P1 536 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 GRHL3Q8TE85 626 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 SRPK1Q96SB4 655 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 DHRS4Q9BTZ2 278 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 SRMSQ9H3Y6 488 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 SYTL2Q9HCH5 934 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 IL17CQ9P0M4 197 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 ACSL5Q9ULC5 683 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 NOVA2Q9UNW9 492 aaKnown RBP19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 COLEC10Q9Y6Z7 277 aa19.7■□□□□ 0.74
SQSTM1-215ENST00000514093 F8P00451 2351 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 GLYATL1P3A0A0U1RQE8 302 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 IPO13O94829 963 aaKnown RBP19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 RBM43Q6ZSC3 357 aaKnown RBP19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 CDHR3Q6ZTQ4 885 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 PPP1R32Q7Z5V6 425 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 DAAM2Q86T65 1068 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 FJX1Q86VR8 437 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 CFAP206Q8IYR0 622 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 OR2L2Q8NH16 312 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 LCN9Q8WX39 176 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 TRAPPC9Q96Q05 1148 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 DEF6Q9H4E7 631 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 GLOD4Q9HC38 313 aa19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 GPN3Q9UHW5 284 aaPredicted RBP19.69■□□□□ 0.74
SQSTM1-215ENST00000514093 ADGRG4Q8IZF6 3080 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 BTN3A1O00481 513 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 GAPDHSO14556 408 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 CNOT3O75175 753 aaKnown RBP19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 ALOX12BO75342 701 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 HBQ1P09105 142 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 KDELR1P24390 212 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 ITGA3P26006 1051 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 CHRNA4P43681 627 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 PTPRCAPQ14761 206 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 LONRF2Q1L5Z9 754 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 ZC3H18Q86VM9 953 aaKnown RBP19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 FERD3LQ96RJ6 166 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 WDR77Q9BQA1 342 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 SPRTNQ9H040 489 aaPredicted RBP19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 ATP13A2Q9NQ11 1180 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 CDYLQ9Y232 598 aa19.68■□□□□ 0.74
SQSTM1-215ENST00000514093 MAP3K7O43318 606 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 KLHL41O60662 606 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 IGHEP01854 428 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 MSL3P1P0C860 447 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 NDUFS1P28331 727 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 NFKBIBQ15653 356 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 STX1AQ16623 288 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 SIRPB2Q5JXA9 342 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 ACVR1CQ8NER5 493 aa19.67■□□□□ 0.74
SQSTM1-215ENST00000514093 DNAJB14Q8TBM8 379 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms