RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ITGB1P05556 798 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 TGFB3P10600 412 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF823P16415 610 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 SEMA3AQ14563 771 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 PCBP1Q15365 356 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 CARM1Q86X55 608 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 PDSS2Q86YH6 399 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 SHC3Q92529 594 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MTFMTQ96DP5 389 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 HIST1H2AAQ96QV6 131 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 AGAP2Q99490 1192 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 TM9SF2Q99805 663 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 FUNDC2Q9BWH2 189 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 SRRDQ9UH36 339 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 GTF2IRD1Q9UHL9 959 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 WASF2Q9Y6W5 498 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 TNS3Q68CZ2 1445 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 PNPLA6Q8IY17 1366 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 TTC34A8MYJ7 566 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 F8VP50 259 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 EI24O14681 340 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 SCN2BO60939 215 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 CRTAPO75718 401 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MT-ND2P03891 347 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 PRR5P85299 388 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 DEFA6Q01524 100 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 HSPA14Q0VDF9 509 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 HEPACAMQ14CZ8 416 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC1A5Q15758 541 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 CPSF6Q16630 551 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MEDAGQ5VYS4 303 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 VSTM1Q6UX27 236 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC26A9Q7LBE3 791 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 ACBD4Q8NC06 268 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 FAM151AQ8WW52 585 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 POTEKPQ9BYX7 375 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 C17orf102A2RUQ5 167 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 F5H0A9 414 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 KLF11O14901 512 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 NKRFO15226 690 aaKnown RBP eCLIP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 GLP1RP43220 463 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 LUMP51884 338 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 CDH12P55289 794 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 LSAMPQ13449 338 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ANKDD1AQ495B1 522 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 KANK2Q63ZY3 851 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ARSKQ6UWY0 536 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC16A9Q7RTY1 509 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 GOLM1Q8NBJ4 401 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 OR51D1Q8NGF3 324 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 JPH3Q8WXH2 748 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 COL26A1Q96A83 441 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 LINGO1Q96FE5 620 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 MFSD14AQ96MC6 490 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 COPS8Q99627 209 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ENAMQ9NRM1 1142 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC7A8Q9UHI5 535 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 USP21Q9UK80 565 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC27A6Q9Y2P4 619 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 RFPL2O75678 378 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 UBXN7O94888 489 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 CLDN9O95484 217 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 MAP3K8P41279 467 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 KLHL35Q6PF15 583 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 DPY19L3Q6ZPD9 716 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF227Q86WZ6 799 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 TRAPPC5Q8IUR0 188 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 OR5T2Q8NGG2 359 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 OR10T2Q8NGX3 314 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 BTF3L4Q96K17 158 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 GAD1Q99259 594 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 OMDQ99983 421 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 TAS2R9Q9NYW1 312 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 STXBP5LQ9Y2K9 1186 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 EXOSC1Q9Y3B2 195 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 A0A1B0GVM2 712 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 TCAF2A6NFQ2 919 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 MAGEB17A8MXT2 336 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 AGR2O95994 175 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 RAB5CP51148 216 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 GNASQ5JWF2 1037 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 C9orf64Q5T6V5 341 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 DRICH1Q6PGQ1 229 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ANKRD13BQ86YJ7 626 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 OR10H4Q8NGA5 316 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 SCGB1C1Q8TD33 95 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 SLC6A16Q9GZN6 736 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 TKTL2Q9H0I9 626 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 SYT4Q9H2B2 425 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 OR12D3Q9UGF7 316 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ZNF490Q9ULM2 529 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 ATP10AO60312 1499 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 HTR3EA5X5Y0 456 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 RENP00797 406 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 FPR1P21462 350 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 GRK6P43250 576 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 IDH3AP50213 366 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 NKX6-1P78426 367 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 NOMO1Q15155 1222 aa11.07□□□□□ -0.64
LIMCH1-217ENST00000512946 NTRK3Q16288 839 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms