RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 F2RL1P55085 397 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 PAX9P55771 341 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 TMEM50BP56557 158 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 TAS2R40P59535 323 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 HERV-K104P61576 105 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 CYCSP99999 105 aaKnown RBP2.3□□□□□ -2.04
NUP54-208ENST00000508604 GAGE2BQ13066 116 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 UBE2V1Q13404 147 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 FRG1Q14331 258 aaKnown RBP2.3□□□□□ -2.04
NUP54-208ENST00000508604 BAK1Q16611 211 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 RNF212Q495C1 297 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 GAGE2EQ4V326 116 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 GAGE2AQ6NT46 116 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 CPOQ8IVL8 374 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.3□□□□□ -2.04
NUP54-208ENST00000508604 Q8NBF4 154 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 RFT1Q96AA3 541 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 GCC1Q96CN9 775 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 MMABQ96EY8 250 aaPredicted RBP2.3□□□□□ -2.04
NUP54-208ENST00000508604 LINC00167Q96N53 147 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 NUDCD1Q96RS6 583 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 SEPT5Q99719 369 aaPredicted RBP2.3□□□□□ -2.04
NUP54-208ENST00000508604 ACKR4Q9NPB9 350 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 GAGE2DQ9UEU5 116 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 PCDHGB3Q9Y5G1 929 aa2.3□□□□□ -2.04
NUP54-208ENST00000508604 H3BQ06 376 aaPredicted RBP2.29□□□□□ -2.04
NUP54-208ENST00000508604 PHOX2AO14813 284 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 HIST1H2ABP04908 130 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 HIST1H2ADP20671 130 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 TRAPPC10P48553 1259 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 VAMP2P63027 116 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 TLE2Q04725 743 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 PTP4A2Q12974 167 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 CALCOCO2Q13137 446 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 CCNG2Q16589 344 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 ZNF534Q76KX8 674 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 HIST3H2AQ7L7L0 130 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 LRRTM4Q86VH4 590 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 RNF168Q8IYW5 571 aaPredicted RBP2.29□□□□□ -2.04
NUP54-208ENST00000508604 NFKBIDQ8NI38 313 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 UBE2Q2Q8WVN8 375 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 TOMM40LQ969M1 308 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 FAM149B1Q96BN6 582 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 SLC39A13Q96H72 371 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 EGLN2Q96KS0 407 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 SGK494Q96LW2 274 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 ISCA1Q9BUE6 129 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 SMC4Q9NTJ3 1288 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 PANK4Q9NVE7 773 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 GRID1Q9ULK0 1009 aa2.29□□□□□ -2.04
NUP54-208ENST00000508604 MSGN1A6NI15 193 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 ACOD1A6NK06 481 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 ZNF195O14628 629 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 SMAD9O15198 467 aaKnown RBP2.28□□□□□ -2.04
NUP54-208ENST00000508604 TNFSF14O43557 240 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 CENPBP07199 599 aaPredicted RBP2.28□□□□□ -2.04
NUP54-208ENST00000508604 PRKACGP22612 351 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 CA6P23280 308 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 OPRL1P41146 370 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 PRKAA1Q13131 559 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 PPFIA1Q13136 1202 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 OS9Q13438 667 aaPredicted RBP2.28□□□□□ -2.04
NUP54-208ENST00000508604 TRPC3Q13507 836 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 MTHFSDQ2M296 383 aaKnown RBP2.28□□□□□ -2.04
NUP54-208ENST00000508604 MOGAT2Q3SYC2 334 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 LYSMD4Q5XG99 296 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 ADALQ6DHV7 355 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 SEPT14Q6ZU15 432 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 GALNT5Q7Z7M9 940 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 KRTAP11-1Q8IUC1 163 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 ANKRD18AQ8IVF6 992 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 GPD1LQ8N335 351 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 TMTC2Q8N394 836 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 PPFIBP2Q8ND30 876 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 MIPOL1Q8TD10 442 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 MAELQ96JY0 434 aaKnown RBP2.28□□□□□ -2.04
NUP54-208ENST00000508604 PRICKLE1Q96MT3 831 aaPredicted RBP2.28□□□□□ -2.04
NUP54-208ENST00000508604 MTMR10Q9NXD2 777 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 RIPK3Q9Y572 518 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 ATRXP46100 2492 aa2.28□□□□□ -2.04
NUP54-208ENST00000508604 LOC101059948A0A1B0GTJ6 334 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 CCDC196A0A1B0GTZ2 297 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 ELOVL7A1L3X0 281 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 NDUFS3O75489 264 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 GPIP06744 558 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 ZBTB25P24278 435 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 FAM109BQ6ICB4 259 aaPredicted RBP2.28□□□□□ -2.05
NUP54-208ENST00000508604 Q6ZVH6 145 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 NUP37Q8NFH4 326 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 OR10G8Q8NGN5 311 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 DAZLQ92904 295 aaKnown RBP2.28□□□□□ -2.05
NUP54-208ENST00000508604 SLC45A3Q96JT2 553 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 GFI1Q99684 422 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 STRA6Q9BX79 667 aa2.28□□□□□ -2.05
NUP54-208ENST00000508604 TRMT1Q9NXH9 659 aaKnown RBP2.28□□□□□ -2.05
NUP54-208ENST00000508604 C15orf61A6NNL5 157 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 EIF3FO00303 357 aaPredicted RBP2.27□□□□□ -2.05
NUP54-208ENST00000508604 PAGE4O60829 102 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 GPC4O75487 556 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 SEC14L2O76054 403 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms