RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 K7EPI3 171 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 ZSCAN9O15535 394 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 SYNCRIPO60506 623 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 CLDN7O95471 211 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 PRAMEF1O95521 474 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 CLCN7P51798 805 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 C21orf59P57076 290 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 SLC36A3Q495N2 470 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 NANOGP8Q6NSW7 305 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 IL27RAQ6UWB1 636 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 MBOAT1Q6ZNC8 495 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 ADAMTS19Q8TE59 1207 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 NSUN3Q9H649 340 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 NANOGQ9H9S0 305 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 CNOT11Q9UKZ1 510 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 CPQQ9Y646 472 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 AGRPO00253 132 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 IDO1P14902 403 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 RXRGP48443 463 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 HSPA7P48741 367 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 ADRM1Q16186 407 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 CARTPTQ16568 116 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 PTRHD1Q6GMV3 140 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 ABRAXAS1Q6UWZ7 409 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 Q6ZSR9 355 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 SERPINA9Q86WD7 417 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 SLC15A4Q8N697 577 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 TRPV3Q8NET8 790 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 METTL6Q8TCB7 284 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 MYRFLQ96LU7 910 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 SMG9Q9H0W8 520 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 PLGRKTQ9HBL7 147 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 AIG1Q9NVV5 245 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 B3GALT4O96024 378 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 LDLRP01130 860 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 ALBP02768 609 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 CAPNS1P04632 268 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 AGXTP21549 392 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 MEP1AQ16819 746 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 C6orf136Q5SQH8 315 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 GLYATQ6IB77 296 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 BORAQ6PGQ7 559 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 CHST9Q7L1S5 443 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 SMYD1Q8NB12 490 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 OR56A4Q8NGH8 313 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 C9orf16Q9BUW7 83 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 ZFP14Q9HCL3 533 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 TRNAU1APQ9NX07 287 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 ST14Q9Y5Y6 855 aa16.25■□□□□ 0.19
CCDC88B-210ENST00000494566 KANSL1LA0AUZ9 987 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 BMP10O95393 424 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 UROSP10746 265 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 CYP4B1P13584 511 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 MYF6P23409 242 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 BMXP51813 675 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 NUP107P57740 925 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 ATP6AP1Q15904 470 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 SLC44A4Q53GD3 710 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 HACD2Q6Y1H2 254 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 TSPAN33Q86UF1 283 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 SFRP1Q8N474 314 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 KCNJ9Q92806 393 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 ITFG2Q969R8 447 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 MYO19Q96H55 970 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 DEFB118Q96PH6 123 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 ASB8Q9H765 288 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 CARS2Q9HA77 564 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 PRM3Q9NNZ6 103 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 ABCD2Q9UBJ2 740 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 VPS4AQ9UN37 437 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 ZNF510Q9Y2H8 683 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 BBIP1A8MTZ0 92 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 SLC22A3O75751 556 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 CHEK2O96017 543 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 HRH2P25021 359 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 GSSP48637 474 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 ENPP6Q6UWR7 440 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 OR4F6Q8NGB9 312 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 TBC1D15Q8TC07 691 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 SDCCAG3Q96C92 435 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 ARMC1Q9NVT9 282 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 GID8Q9NWU2 228 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 ACTR3BQ9P1U1 418 aa16.24■□□□□ 0.19
CCDC88B-210ENST00000494566 KRT87PA6NCN2 255 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 GAPDHSO14556 408 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 HOXA2O43364 376 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 OCM2P0CE71 109 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 OCMP0CE72 109 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 RFC2P35250 354 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 CAPGP40121 348 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PHEXP78562 749 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 CBX3Q13185 183 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 NR1D2Q14995 579 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 XKR7Q5GH72 579 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 ARMC12Q5T9G4 340 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 GOLGA7Q7Z5G4 137 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 GALNT5Q7Z7M9 940 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 GALNT10Q86SR1 603 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 PHACTR4Q8IZ21 702 aa16.23■□□□□ 0.19
CCDC88B-210ENST00000494566 HM13Q8TCT9 377 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms