RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZC3H7BQ9UGR2 993 aaKnown RBP15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 COLEC10Q9Y6Z7 277 aa15.9■□□□□ 0.14
MSH5-SAPCD1-206ENST00000491552 IGHV5-10-1A0A0J9YXX1 117 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 TMEM8BA6NDV4 472 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 E7ESA3 106 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 H3BMM5 538 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 S1PR4O95977 384 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ESR1P03372 595 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 HOXB3P14651 431 aaPredicted RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 TYRP1P17643 537 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 AMD1P17707 334 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 FMO4P31512 558 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CCR7P32248 378 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 SLC1A2P43004 574 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 LIMK2P53671 638 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ADARP55265 1226 aaKnown RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 GABREP78334 506 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 PDIA2Q13087 525 aaKnown RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CTBP1Q13363 440 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 KRT33BQ14525 404 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 PLCL1Q15111 1095 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 TMED2Q15363 201 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 HSP90AA5PQ58FG0 334 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ZNF789Q5FWF6 425 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 C3orf38Q5JPI3 329 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 UNC5AQ6ZN44 842 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ZNF574Q6ZN55 896 aaPredicted RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ANKMY2Q8IV38 441 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 DENND6AQ8IWF6 608 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 UNC5BQ8IZJ1 945 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 WDR36Q8NI36 951 aaKnown RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 GABPB2Q8TAK5 448 aaPredicted RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CCDC74BQ96LY2 380 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 BIRC8Q96P09 236 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CCDC86Q9H6F5 360 aaKnown RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 KIR3DX1Q9H7L2 352 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 POLR1BQ9H9Y6 1135 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 FBXO6Q9NRD1 293 aaPredicted RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 IARS2Q9NSE4 1012 aaKnown RBP15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 OGFRQ9NZT2 677 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 TMEM9Q9P0T7 183 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 SATB2Q9UPW6 733 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CRYL1Q9Y2S2 319 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 AK5Q9Y6K8 562 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 PIKFYVEQ9Y2I7 2098 aa15.89■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CTAGE15A4D2H0 777 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 MPOP05164 745 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 APOA4P06727 396 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CTAGE8P0CG41 777 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ERVK-10P10266 1014 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 THRAP10827 490 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 AOAHP28039 575 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CSE1LP55060 971 aaKnown RBP15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CAV1Q03135 178 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CYP4F3Q08477 520 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 HSPA14Q0VDF9 509 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CBLBQ13191 982 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 EIF3IQ13347 325 aaKnown RBP15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 TRA2AQ13595 282 aaKnown RBP eCLIP15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 STEAP4Q687X5 459 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 RAB11FIP2Q7L804 512 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CTAGE6Q86UF2 777 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CTAGE4Q8IX94 777 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 MMGT1Q8N4V1 131 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 FBXO36Q8NEA4 188 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 MDM1Q8TC05 714 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ASZ1Q8WWH4 475 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 JPH3Q8WXH2 748 aaPredicted RBP15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 TFGQ92734 400 aaPredicted RBP15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ART4Q93070 314 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CERS2Q96G23 380 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 FERD3LQ96RJ6 166 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 LRRC1Q9BTT6 524 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 PLAC1Q9HBJ0 212 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 SLC24A2Q9UI40 661 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 FBXO5Q9UKT4 447 aa15.88■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 A0A1W2PNU3 283 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 BHMG1C9JSJ3 638 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 KPNA5O15131 536 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 EIF3HO15372 352 aaKnown RBP eCLIP15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 NIPSNAP2O75323 286 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 GPC4O75487 556 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 F7P08709 466 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 PKMP14618 531 aaKnown RBP15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 MPSTP25325 297 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ACADLP28330 430 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 CAPZBP47756 277 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 LSSP48449 732 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 MPP1Q00013 466 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 SLC7A5Q01650 507 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 FRG1Q14331 258 aaKnown RBP15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 FASTKD3Q14CZ7 662 aaKnown RBP15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 FOXR1Q6PIV2 292 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 OTOAQ7RTW8 1153 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 PLXDC1Q8IUK5 500 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ZBED8Q8IZ13 594 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 SLC22A15Q8IZD6 547 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 C2CD4AQ8NCU7 369 aaPredicted RBP15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 RCBTB1Q8NDN9 531 aa15.87■□□□□ 0.13
MSH5-SAPCD1-206ENST00000491552 ACVR1CQ8NER5 493 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms