RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PLCL1Q15111 1095 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 FASTKD1Q53R41 847 aaKnown RBP17.67■□□□□ 0.42
COL9A3-214ENST00000490398 ARHGAP40Q5TG30 622 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 FBXO38Q6PIJ6 1188 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 C17orf53Q8N3J3 647 aaPredicted RBP17.67■□□□□ 0.42
COL9A3-214ENST00000490398 ELMO1Q92556 727 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 ANP32BQ92688 251 aaKnown RBP17.67■□□□□ 0.42
COL9A3-214ENST00000490398 FERD3LQ96RJ6 166 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 DDX47Q9H0S4 455 aaKnown RBP17.67■□□□□ 0.42
COL9A3-214ENST00000490398 KIR3DX1Q9H7L2 352 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 CATSPERZQ9NTU4 200 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 BFARQ9NZS9 450 aa17.67■□□□□ 0.42
COL9A3-214ENST00000490398 IGHV5-51A0A0C4DH38 117 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 SLC5A10A0PJK1 596 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 KLHL33A6NCF5 533 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 BHMG1C9JSJ3 638 aaPredicted RBP17.66■□□□□ 0.42
COL9A3-214ENST00000490398 CES2O00748 559 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 CD3EAPO15446 510 aaKnown RBP17.66■□□□□ 0.42
COL9A3-214ENST00000490398 RASSF9O75901 435 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 LIPCP11150 499 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 CSE1LP55060 971 aaKnown RBP17.66■□□□□ 0.42
COL9A3-214ENST00000490398 CDK16Q00536 496 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 CACHD1Q5VU97 1274 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 SPNS2Q8IVW8 549 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 KRT222Q8N1A0 295 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 KLHL6Q8WZ60 621 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 PEX13Q92968 403 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 SGSM3Q96HU1 749 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 CAPZA3Q96KX2 299 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 DDA1Q9BW61 102 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 SPRY4Q9C004 299 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 ZNF768Q9H5H4 540 aaKnown RBP17.66■□□□□ 0.42
COL9A3-214ENST00000490398 HRASLS2Q9NWW9 162 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.66■□□□□ 0.42
COL9A3-214ENST00000490398 IL1RAPL1Q9NZN1 696 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 EPHA6Q9UF33 1036 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 SOX13Q9UN79 622 aa17.66■□□□□ 0.42
COL9A3-214ENST00000490398 SDK2Q58EX2 2172 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 OR6C74A6NCV1 312 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 OR5K3A6NET4 321 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 TPBGLP0DKB5 382 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 CCR7P32248 378 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 PTGIRP43119 386 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 FNTAP49354 379 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 TMPRSS3P57727 454 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 PRKG2Q13237 762 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 BOP1Q14137 746 aaKnown RBP17.65■□□□□ 0.42
COL9A3-214ENST00000490398 SOWAHCQ53LP3 525 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-214ENST00000490398 TMEM164Q5U3C3 297 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 BROXQ5VW32 411 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 LYPLAL1Q5VWZ2 237 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 PAPD7Q5XG87 772 aaKnown RBP17.65■□□□□ 0.42
COL9A3-214ENST00000490398 TIPARPQ7Z3E1 657 aaKnown RBP17.65■□□□□ 0.42
COL9A3-214ENST00000490398 PRSS42Q7Z5A4 293 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 CREG2Q8IUH2 290 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 VRK3Q8IV63 474 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 NAT8LQ8N9F0 302 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 OR4E2Q8NGC2 313 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.65■□□□□ 0.42
COL9A3-214ENST00000490398 NAP1L3Q99457 506 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-214ENST00000490398 MAP3K3Q99759 626 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 B3GNT4Q9C0J1 378 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 RAB33BQ9H082 229 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 XKR8Q9H6D3 395 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 MRM3Q9HC36 420 aaKnown RBP17.65■□□□□ 0.42
COL9A3-214ENST00000490398 FBXO8Q9NRD0 319 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 CDYLQ9Y232 598 aa17.65■□□□□ 0.42
COL9A3-214ENST00000490398 TEX51A0A1B0GUA7 166 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-214ENST00000490398 BTN3A3O00478 584 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 KALRNO60229 2985 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 VAPBO95292 243 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 FTH1P02794 183 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 OR56A5P0C7T3 313 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 ZNF28P17035 718 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 POLR2CP19387 275 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-214ENST00000490398 ACADLP28330 430 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 KPNA2P52292 529 aaKnown RBP17.64■□□□□ 0.41
COL9A3-214ENST00000490398 KRT33BQ14525 404 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 KCNAB1Q14722 419 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 DCAF12Q5T6F0 453 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 PCSK4Q6UW60 755 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 GPR155Q7Z3F1 870 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 OR52E1Q8NGJ3 308 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 OR5AR1Q8NGP9 310 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 TFGQ92734 400 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-214ENST00000490398 NKD1Q969G9 470 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 ZDHHC12Q96GR4 267 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 ELMO2Q96JJ3 720 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 SERPINB12Q96P63 405 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 CCNL2Q96S94 520 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-214ENST00000490398 HGH1Q9BTY7 390 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 P2RY12Q9H244 342 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 VPS37BQ9H9H4 285 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 SEMA5BQ9P283 1151 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.64■□□□□ 0.41
COL9A3-214ENST00000490398 COLEC10Q9Y6Z7 277 aa17.64■□□□□ 0.41
COL9A3-214ENST00000490398 K7ENP7 123 aa17.63■□□□□ 0.41
COL9A3-214ENST00000490398 LIN7AO14910 233 aaPredicted RBP17.63■□□□□ 0.41
COL9A3-214ENST00000490398 TCP1P17987 556 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms