RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MTFMTQ96DP5 389 aaKnown RBP17.64■□□□□ 0.41
VIM-206ENST00000487938 KLF16Q9BXK1 252 aaPredicted RBP17.64■□□□□ 0.41
VIM-206ENST00000487938 NEUROG3Q9Y4Z2 214 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 ANGPTL3Q9Y5C1 460 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 A0A1W2PQ45 241 aaPredicted RBP17.64■□□□□ 0.41
VIM-206ENST00000487938 A0A1W2PQY0 241 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 GOLGA8CPA6NN73 597 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 KCNH1O95259 989 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 SELPP16109 830 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 GGT1P19440 569 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 MTHFRP42898 656 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 ARSFP54793 590 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 NUP107P57740 925 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 KIAA0040Q15053 153 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 TAF12Q16514 161 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 PHKG1Q16816 387 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 ENPP6Q6UWR7 440 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 TMEM26Q6ZUK4 368 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 CLEC4FQ8N1N0 589 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 WFDC5Q8TCV5 224 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 IFT80Q9P2H3 777 aaPredicted RBP17.64■□□□□ 0.41
VIM-206ENST00000487938 UTS2RQ9UKP6 389 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 CCL27Q9Y4X3 112 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 PCDHB1Q9Y5F3 818 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 DYTNA2CJ06 578 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 GAPDHSO14556 408 aaPredicted RBP17.63■□□□□ 0.41
VIM-206ENST00000487938 GSTA4O15217 222 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 ZNF7P17097 686 aaPredicted RBP17.63■□□□□ 0.41
VIM-206ENST00000487938 EEF1B2P24534 225 aaKnown RBP17.63■□□□□ 0.41
VIM-206ENST00000487938 SHMT2P34897 504 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 ENTPD1P49961 510 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 MAPK10P53779 464 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 SEMG2Q02383 582 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 CHRNB3Q05901 458 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 FAM174BQ3ZCQ3 159 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 FAM98BQ52LJ0 330 aaKnown RBP17.63■□□□□ 0.41
VIM-206ENST00000487938 ARMC12Q5T9G4 340 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 DNAJC14Q6Y2X3 702 aaPredicted RBP17.63■□□□□ 0.41
VIM-206ENST00000487938 KRTCAP2Q8N6L1 136 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 HSPBAP1Q96EW2 488 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 TBCDQ9BTW9 1192 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 FAM126AQ9BYI3 521 aaPredicted RBP17.63■□□□□ 0.41
VIM-206ENST00000487938 HIPK3Q9H422 1215 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 IKZF5Q9H5V7 419 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 MAGEE1Q9HCI5 957 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 LTB4R2Q9NPC1 389 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 TMEM45AQ9NWC5 275 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 KLQ9UEF7 1012 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.63■□□□□ 0.41
VIM-206ENST00000487938 VPS51Q9UID3 782 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 GMNNO75496 209 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 CLDN7O95471 211 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 RAP2AP10114 183 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 JAK1P23458 1154 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 CSKP41240 450 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 TMED1Q13445 227 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 CCNYL2Q5T2Q4 361 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 MBOAT1Q6ZNC8 495 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 PDPRQ8NCN5 879 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 CLHC1Q8NHS4 586 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 PIH1D2Q8WWB5 315 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 MYO19Q96H55 970 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 WWOXQ9NZC7 414 aa17.63■□□□□ 0.41
VIM-206ENST00000487938 THSD7BQ9C0I4 1608 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 TET1Q8NFU7 2136 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 PLXNA4Q9HCM2 1894 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 C1orf232A0A0U1RR37 186 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 H3BMQ9 156 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 SMAD6O43541 496 aaKnown RBP17.62■□□□□ 0.41
VIM-206ENST00000487938 PFDN1O60925 122 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 TULP3O75386 442 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 DEAF1O75398 565 aaPredicted RBP17.62■□□□□ 0.41
VIM-206ENST00000487938 ALDH3A2P51648 485 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 PPP1R8Q12972 351 aaKnown RBP17.62■□□□□ 0.41
VIM-206ENST00000487938 LAPTM5Q13571 262 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 CRY1Q16526 586 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 ANKRD34AQ69YU3 496 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 SLC8B1Q6J4K2 584 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 LIX1Q8N485 282 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 OR2T12Q8NG77 320 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 SLC13A3Q8WWT9 602 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 GTF2H4Q92759 462 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 PPP3R2Q96LZ3 170 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 COG8Q96MW5 612 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 SLC22A12Q96S37 553 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 OSBPL6Q9BZF3 934 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 SMURF2Q9HAU4 748 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 ZFYVE1Q9HBF4 777 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 LIMD1Q9UGP4 676 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 ZNHIT2Q9UHR6 403 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 ADGRE2Q9UHX3 823 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 FAF1Q9UNN5 650 aaPredicted RBP17.62■□□□□ 0.41
VIM-206ENST00000487938 EIF3LQ9Y262 564 aaKnown RBP17.62■□□□□ 0.41
VIM-206ENST00000487938 CASP8AP2Q9UKL3 1982 aa17.62■□□□□ 0.41
VIM-206ENST00000487938 GRXCR2A6NFK2 248 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 MAGEB3O15480 346 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 SEC22BO75396 215 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 PGLSO95336 258 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 GLUD1P00367 558 aa17.61■□□□□ 0.41
VIM-206ENST00000487938 MBL2P11226 248 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms