RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CDK18Q07002 472 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ZFP36L1Q07352 338 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 PPP2R5EQ16537 467 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 CLPPQ16740 277 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ZNF569Q5MCW4 686 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 DNAJC14Q6Y2X3 702 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 B4GALNT4Q76KP1 1039 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 MARK2Q7KZI7 788 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 GPR155Q7Z3F1 870 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 TMC3Q7Z5M5 1100 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 PIM3Q86V86 326 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ZC3H18Q86VM9 953 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 TMTC1Q8IUR5 882 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 NAGSQ8N159 534 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 TADA1Q96BN2 335 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 MRFAP1L1Q96HT8 127 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 TEKT5Q96M29 485 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 FRMD6Q96NE9 622 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 TRIB3Q96RU7 358 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 WDR24Q96S15 920 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 VAT1Q99536 393 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 CMKLR1Q99788 373 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ZSCAN5AQ9BUG6 496 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 SPATA16Q9BXB7 569 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 GPR63Q9BZJ6 419 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 GOLPH3Q9H4A6 298 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 GLOD4Q9HC38 313 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 AKAP7Q9P0M2 348 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 SAE1Q9UBE0 346 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ZNHIT2Q9UHR6 403 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ZNF711Q9Y462 761 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 LOXL2Q9Y4K0 774 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 PCDHGA7Q9Y5G6 932 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 MGAQ8IWI9 3026 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 FAM221AA4D161 298 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 EIF4E1BA6NMX2 242 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 GPR89AB7ZAQ6 455 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 GRID2O43424 1007 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PMPCBO75439 489 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 NDUFA10O95299 355 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 CPNE6O95741 557 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PIRTP0C851 137 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 GPR89BP0CG08 455 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 ACP5P13686 325 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC2A4P14672 509 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC5A2P31639 672 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 FASLGP48023 281 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 NAP1L1P55209 391 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 CXADRP78310 365 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 KRTAP1-1Q07627 177 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 WASHC5Q12768 1159 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 XRCC4Q13426 336 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 LLGL1Q15334 1064 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 AMZ1Q400G9 498 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 SOWAHCQ53LP3 525 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PHF19Q5T6S3 580 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 CCDC181Q5TID7 509 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 ALS2CLQ60I27 953 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PDPK2PQ6A1A2 396 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 CHST15Q7LFX5 561 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PID1Q7Z2X4 250 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 JAMLQ86YT9 394 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PHYKPLQ8IUZ5 450 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 SLITRK4Q8IW52 837 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 SFRP1Q8N474 314 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 TRAM1L1Q8N609 369 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 GPR26Q8NDV2 337 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 SPATA22Q8NHS9 363 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PATE1Q8WXA2 126 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 HTR3CQ8WXA8 447 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 KRT35Q92764 455 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 HAUS1Q96CS2 278 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 EID2BQ96D98 161 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 AHCYL2Q96HN2 611 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 CCDC74BQ96LY2 380 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 QKIQ96PU8 341 aaKnown RBP eCLIP6.71□□□□□ -1.343e-7■■■■■ 44.5
CCDC88A-213ENST00000476903 DPYSL5Q9BPU6 564 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 FERMT1Q9BQL6 677 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 HERPUD2Q9BSE4 406 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 CARD9Q9H257 536 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 STN1Q9H668 368 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 RDH14Q9HBH5 336 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 UBP1Q9NZI7 540 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 KLHL8Q9P2G9 620 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 NFKBIL1Q9UBC1 381 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PISDQ9UG56 409 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 FAM153AQ9UHL3 310 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 TRHDEQ9UKU6 1024 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 TCFL5Q9UL49 500 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 TFR2Q9UP52 801 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 SHOC2Q9UQ13 582 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 KCNK6Q9Y257 313 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 PLEKHM1Q9Y4G2 1056 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 AHCTF1Q8WYP5 2266 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 IGSF10Q6WRI0 2623 aa6.71□□□□□ -1.34
CCDC88A-213ENST00000476903 ATMQ13315 3056 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 SDK2Q58EX2 2172 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 IGHV1OR21-1A0A087WYE8 117 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 KIR2DS5A0A0G2JLQ3 304 aa6.7□□□□□ -1.34
CCDC88A-213ENST00000476903 A0A0G2JNG1 304 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms