RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SP140LQ9H930 580 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 C3orf18Q9UK00 162 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 PABPN1LA6NDY0 278 aaKnown RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 J3KR12 359 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CACNG3O60359 315 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 WISP3O95389 354 aaPredicted RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CNPP09543 421 aaKnown RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 PRKG2Q13237 762 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 CARD16Q5EG05 197 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TPRG1LQ5T0D9 272 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ZFAND4Q86XD8 727 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TMEM209Q96SK2 561 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ABCG8Q9H221 673 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 MUC13Q9H3R2 512 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 KAT8Q9H7Z6 458 aaKnown RBP11.53□□□□□ -0.56
CPSF3-202ENST00000460593 TRPV5Q9NQA5 729 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 FBXL12Q9NXK8 326 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 ZNF221Q9UK13 617 aa11.53□□□□□ -0.56
CPSF3-202ENST00000460593 PDZK1P1A8MUH7 402 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 RGS13O14921 159 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 TFECO14948 347 aaPredicted RBP11.52□□□□□ -0.57
CPSF3-202ENST00000460593 KMOO15229 486 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 SERPINA1P01009 418 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 LGALS2P05162 132 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 TGFB3P10600 412 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 IGFBP5P24593 272 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 ACVR2AP27037 513 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 KRT20P35900 424 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 CACNB2Q08289 660 aaPredicted RBP11.52□□□□□ -0.57
CPSF3-202ENST00000460593 SCAPQ12770 1279 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 DPP9Q86TI2 863 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 LRRC52Q8N7C0 313 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 ASCC1Q8N9N2 400 aaKnown RBP11.52□□□□□ -0.57
CPSF3-202ENST00000460593 CHST13Q8NET6 341 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 IL17RDQ8NFM7 739 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 NETO1Q8TDF5 533 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 SLC10A4Q96EP9 437 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 PAQR5Q9NXK6 330 aaPredicted RBP11.52□□□□□ -0.57
CPSF3-202ENST00000460593 ERAP1Q9NZ08 941 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 SNX8Q9Y5X2 465 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 BRCA1P38398 1863 aaKnown RBP11.52□□□□□ -0.57
CPSF3-202ENST00000460593 A0A0G2JMZ2 1700 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 LRRC37A2A6NM11 1700 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 FAM234BA2RU67 622 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 H0Y626 953 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 BTN3A1O00481 513 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 DSCR3O14972 297 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 AIREO43918 545 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 TRIM16O95361 564 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 MYCLP1P12525 358 aaPredicted RBP11.52□□□□□ -0.57
CPSF3-202ENST00000460593 OR2B6P58173 313 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 SLC10A7Q0GE19 358 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 SLC14A2Q15849 920 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 RFTN2Q52LD8 501 aaPredicted RBP11.52□□□□□ -0.57
CPSF3-202ENST00000460593 RAP1GAP2Q684P5 730 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 ANKS6Q68DC2 871 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 IL27RAQ6UWB1 636 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 EID3Q8N140 333 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 CADM2Q8N3J6 435 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 CDCA5Q96FF9 252 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 TNIP3Q96KP6 325 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 ZNF560Q96MR9 790 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 CITED4Q96RK1 184 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 TTC3P53804 2025 aa11.52□□□□□ -0.57
CPSF3-202ENST00000460593 hCG_2039718K7EN88 272 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 CXCR6O00574 342 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 PIRO00625 290 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 MATN3O15232 486 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 HPRP00739 348 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 PRR35P0CG20 571 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 FDXRP22570 491 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 CCNCP24863 283 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 TAF6P49848 677 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 CDKN1CP49918 316 aaPredicted RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 LILRA4P59901 499 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 TOP3AQ13472 1001 aaPredicted RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 GALNT3Q14435 633 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 PON2Q15165 354 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 BCL7AQ4VC05 210 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 Q5BKY6 102 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 COQ5Q5HYK3 327 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 SYT6Q5T7P8 510 aaPredicted RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ZCCHC8Q6NZY4 707 aaKnown RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 KDELC1Q6UW63 502 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 KRTCAP2Q8N6L1 136 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 MTMR14Q8NCE2 650 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 OR6F1Q8NGZ6 308 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 PCED1BQ96HM7 432 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 CEP295NLQ96MC4 621 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 UGT2B28Q9BY64 529 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 OR51E2Q9H255 320 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 MOV10Q9HCE1 1003 aaKnown RBP11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ZMYM5Q9UJ78 669 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 ABCG2Q9UNQ0 655 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 NEU3Q9UQ49 428 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 GMPPBQ9Y5P6 360 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 METTL15A6NJ78 407 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 PSMD3O43242 534 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 RGS10O43665 173 aa11.51□□□□□ -0.57
CPSF3-202ENST00000460593 EIF2S1P05198 315 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms