RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 HAUS5O94927 633 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 PKMP14618 531 aaKnown RBP27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 CARSP49589 748 aaKnown RBP27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 EPHA4P54764 986 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 GPLD1P80108 840 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 MPP1Q00013 466 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 TARDBPQ13148 414 aaKnown RBP eCLIP27.34■■□□□ 1.974e-11■■■■■ 35.3
SMARCC1-203ENST00000454240 CCNI2Q6ZMN8 369 aaPredicted RBP27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 KIAA0408Q6ZU52 694 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 MARCH9Q86YJ5 346 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 ASZ1Q8WWH4 475 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 DEPDC7Q96QD5 511 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 SYNDIG1Q9H7V2 258 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 PPANQ9NQ55 473 aaKnown RBP27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 ATXN7L1Q9ULK2 861 aaPredicted RBP27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 MSRB2Q9Y3D2 182 aa27.34■■□□□ 1.97
SMARCC1-203ENST00000454240 NCOR2Q9Y618 2525 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 GPR18Q14330 331 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 CLPPQ16740 277 aaPredicted RBP27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 AMZ1Q400G9 498 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 SYTL3Q4VX76 610 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 DNTTIP2Q5QJE6 756 aaKnown RBP27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 ZNF549Q6P9A3 640 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 CNSTQ6PJW8 725 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 GALNT7Q86SF2 657 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 PDZD3Q86UT5 571 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 PALM2Q8IXS6 379 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 ZFPM2Q8WW38 1151 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 TMEM159Q96B96 161 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 TBC1D10AQ9BXI6 508 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 LATS2Q9NRM7 1088 aa27.33■■□□□ 1.97
SMARCC1-203ENST00000454240 D6RAR5 112 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 IFRD1O00458 451 aaPredicted RBP27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 KPNA5O15131 536 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 NIPSNAP2O75323 286 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 CPNE6O95741 557 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 APOA4P06727 396 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 ACADLP28330 430 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 GABRB3P28472 473 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 PDX1P52945 283 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 HSPA14Q0VDF9 509 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 NKAIN2Q5VXU1 208 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 DUS1LQ6P1R4 473 aaKnown RBP27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 CCDC25Q86WR0 208 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 LRRN4CLQ8ND94 238 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 HEBP2Q9Y5Z4 205 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 COLEC10Q9Y6Z7 277 aa27.32■■□□□ 1.96
SMARCC1-203ENST00000454240 CSO75390 466 aaKnown RBP27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 SLCO2B1O94956 709 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 AHSGP02765 367 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 SSTR1P30872 391 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 MAGEA4P43358 317 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 CFHR1Q03591 330 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 MGAT5Q09328 741 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 ISXQ2M1V0 245 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 USP53Q70EK8 1073 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 OTOAQ7RTW8 1153 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 TMPRSS9Q7Z410 1059 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 PIM3Q86V86 326 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 VRK3Q8IV63 474 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 SLC22A15Q8IZD6 547 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 OR10G6Q8NH81 332 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 TFGQ92734 400 aaPredicted RBP27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 EPB41L1Q9H4G0 881 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 COMMD10Q9Y6G5 202 aa27.31■■□□□ 1.96
SMARCC1-203ENST00000454240 GSTA2P09210 222 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 CHRM3P20309 590 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 NDUFS1P28331 727 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 CSE1LP55060 971 aaKnown RBP27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 CAMK2BQ13554 666 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 PLEKHS1Q5SXH7 462 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 CYS1Q717R9 158 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 IFT81Q8WYA0 676 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 AHCYL2Q96HN2 611 aaKnown RBP27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 C9orf72Q96LT7 481 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 NUDT22Q9BRQ3 303 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 KIR3DX1Q9H7L2 352 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 RDH14Q9HBH5 336 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 SLC17A6Q9P2U8 582 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 GALPQ9UBC7 116 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 MED16Q9Y2X0 877 aa27.3■■□□□ 1.96
SMARCC1-203ENST00000454240 DUX1O43812 170 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 ECHS1P30084 290 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 GPX6P59796 221 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 ZFP36L1Q07352 338 aaKnown RBP27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 TMED2Q15363 201 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 ZNF574Q6ZN55 896 aaPredicted RBP27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 CAPN12Q6ZSI9 719 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 C3orf62Q6ZUJ4 267 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 GRAMD1AQ96CP6 724 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 FERD3LQ96RJ6 166 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 DPYSL5Q9BPU6 564 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 AARSD1Q9BTE6 412 aaKnown RBP27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 CCDC68Q9H2F9 335 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 MVB12BQ9H7P6 319 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 OGFRQ9NZT2 677 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 MTRF1LQ9UGC7 380 aaKnown RBP27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 ENTPD2Q9Y5L3 495 aa27.29■■□□□ 1.96
SMARCC1-203ENST00000454240 CSF2RBP32927 897 aa27.28■■□□□ 1.96
SMARCC1-203ENST00000454240 CLCN7P51798 805 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms