RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 PNMA8BQ9ULN7 279 aaPredicted RBP18.91■□□□□ 0.62
HMGA1-205ENST00000447654 SNX7Q9UNH6 387 aa18.91■□□□□ 0.62
HMGA1-205ENST00000447654 FIS1Q9Y3D6 152 aa18.91■□□□□ 0.62
HMGA1-205ENST00000447654 BCKDKO14874 412 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 ALPPP05187 535 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 PPP3CCP48454 512 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 IFRD2Q12894 506 aaPredicted RBP18.9■□□□□ 0.62
HMGA1-205ENST00000447654 DGCR6Q14129 220 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 ZNF667Q5HYK9 610 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 PRAMEF19Q5SWL8 479 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 GLYATQ6IB77 296 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 METTL2BQ6P1Q9 378 aaKnown RBP18.9■□□□□ 0.62
HMGA1-205ENST00000447654 UTS2BQ765I0 119 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 ZMIZ2Q8NF64 920 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 POP5Q969H6 163 aaKnown RBP18.9■□□□□ 0.62
HMGA1-205ENST00000447654 CEP41Q9BYV8 373 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 ITM2CQ9NQX7 267 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 TRMT13Q9NUP7 481 aaKnown RBP18.9■□□□□ 0.62
HMGA1-205ENST00000447654 RNF19AQ9NV58 838 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 NUDT5Q9UKK9 219 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 SNX6Q9UNH7 406 aa18.9■□□□□ 0.62
HMGA1-205ENST00000447654 ATP6V1G2-DDX39BF2Z307 99 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 XPNPEP2O43895 674 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 KCNJ13O60928 360 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 EEDO75530 441 aaKnown RBP18.89■□□□□ 0.62
HMGA1-205ENST00000447654 CDK14O94921 469 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 MT-ND2P03891 347 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 MMP3P08254 477 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 PSMB4P28070 264 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 CBX5P45973 191 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 GTF2A2P52657 109 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 EMX2Q04743 252 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 KEAP1Q14145 624 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 GRB14Q14449 540 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 TRIP4Q15650 581 aaPredicted RBP18.89■□□□□ 0.62
HMGA1-205ENST00000447654 GRIK4Q16099 956 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 FAM83EQ2M2I3 478 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 CYHR1Q6ZMK1 362 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 B3GNT8Q7Z7M8 397 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 DPP9Q86TI2 863 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 TP53I13Q8NBR0 393 aaPredicted RBP18.89■□□□□ 0.62
HMGA1-205ENST00000447654 SDHCQ99643 169 aaPredicted RBP18.89■□□□□ 0.62
HMGA1-205ENST00000447654 LRRC3Q9BY71 257 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 CDHR5Q9HBB8 845 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 SETD4Q9NVD3 440 aa18.89■□□□□ 0.62
HMGA1-205ENST00000447654 A8MV72 311 aaPredicted RBP18.89■□□□□ 0.61
HMGA1-205ENST00000447654 AP3D1O14617 1153 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 DSCR3O14972 297 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 TLL1O43897 1013 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 MICAL2O94851 1124 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 AP2A1O95782 977 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 C1QBP02746 253 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 MT-ND1P03886 318 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 SERPINF2P08697 491 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 ATF4P18848 351 aaPredicted RBP18.89■□□□□ 0.61
HMGA1-205ENST00000447654 PIK3CBP42338 1070 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 CTSKP43235 329 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 CSNK2BP67870 215 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 EFR3AQ14156 821 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 MFSD13AQ14CX5 517 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 EFL1Q7Z2Z2 1120 aaKnown RBP18.89■□□□□ 0.61
HMGA1-205ENST00000447654 AMIGO1Q86WK6 493 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 IFNEQ86WN2 208 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 PSTKQ8IV42 348 aaKnown RBP18.89■□□□□ 0.61
HMGA1-205ENST00000447654 ITFG1Q8TB96 612 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 LRRN4Q8WUT4 740 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 GTPBP2Q9BX10 602 aaKnown RBP18.89■□□□□ 0.61
HMGA1-205ENST00000447654 SMURF2Q9HAU4 748 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 ZBTB20Q9HC78 741 aaPredicted RBP18.89■□□□□ 0.61
HMGA1-205ENST00000447654 RCOR3Q9P2K3 495 aaPredicted RBP18.89■□□□□ 0.61
HMGA1-205ENST00000447654 IPPQ9Y573 584 aa18.89■□□□□ 0.61
HMGA1-205ENST00000447654 SSX4O60224 188 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 VPS4BO75351 444 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 ANXA6P08133 673 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 CCNCP24863 283 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 CSTF2P33240 577 aaKnown RBP eCLIP18.88■□□□□ 0.61
HMGA1-205ENST00000447654 IL5RAQ01344 420 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 CDO1Q16878 200 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 DUSP28Q4G0W2 176 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 NCBP2-AS2Q69YL0 99 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 OR5K1Q8NHB7 308 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 PMEPA1Q969W9 287 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 AKTIPQ9H8T0 292 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 PIH1D1Q9NWS0 290 aaKnown RBP18.88■□□□□ 0.61
HMGA1-205ENST00000447654 GINS2Q9Y248 185 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 SCN1AP35498 2009 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 MEN1O00255 615 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 CILPO75339 1184 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 SERPINI2O75830 405 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 EFNA1P20827 205 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-205ENST00000447654 SOX6P35712 828 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 ABCG1P45844 678 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 DSC3Q14574 896 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 ARMC4Q5T2S8 1044 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 ZNF467Q7Z7K2 595 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-205ENST00000447654 SYVN1Q86TM6 617 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 CNTN4Q8IWV2 1026 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 OR52K1Q8NGK4 314 aa18.88■□□□□ 0.61
HMGA1-205ENST00000447654 GTF3C2Q8WUA4 911 aaPredicted RBP18.88■□□□□ 0.61
HMGA1-205ENST00000447654 DNAJA4Q8WW22 397 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms