RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PIP5K1BO14986 540 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 AP2A2O94973 939 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 ENO3P13929 434 aaPredicted RBP20.7■□□□□ 0.91
PTPRF-207ENST00000436724 KPNB1Q14974 876 aaKnown RBP20.7■□□□□ 0.91
PTPRF-207ENST00000436724 PCBP2Q15366 365 aaKnown RBP eCLIP20.7■□□□□ 0.91
PTPRF-207ENST00000436724 TAF11Q15544 211 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 TMEM196Q5HYL7 178 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 TMEM220Q6QAJ8 160 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 PLA2G15Q8NCC3 412 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 RHBDF1Q96CC6 855 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 LENG8Q96PV6 779 aaPredicted RBP20.7■□□□□ 0.91
PTPRF-207ENST00000436724 TMEM79Q9BSE2 394 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.7■□□□□ 0.914e-7■□□□□ 9.9
PTPRF-207ENST00000436724 GIMAP2Q9UG22 337 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 PDE10AQ9Y233 779 aa20.7■□□□□ 0.91
PTPRF-207ENST00000436724 NUAK1O60285 661 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 FTH1P02794 183 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 PTDSS1P48651 473 aaKnown RBP20.7■□□□□ 0.9
PTPRF-207ENST00000436724 NAA25Q14CX7 972 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 PLEKHS1Q5SXH7 462 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 UBE2R2Q712K3 238 aaPredicted RBP20.7■□□□□ 0.9
PTPRF-207ENST00000436724 GOLGA7Q7Z5G4 137 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.7■□□□□ 0.9
PTPRF-207ENST00000436724 HDDC3Q8N4P3 179 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 OR56A4Q8NGH8 313 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 WDR60Q8WVS4 1066 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 STON2Q8WXE9 905 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 MCUR1Q96AQ8 359 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 NAF1Q96HR8 494 aaKnown RBP20.7■□□□□ 0.9
PTPRF-207ENST00000436724 MMADHCQ9H3L0 296 aaPredicted RBP20.7■□□□□ 0.9
PTPRF-207ENST00000436724 LIMD1Q9UGP4 676 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 COPG1Q9Y678 874 aaKnown RBP20.7■□□□□ 0.9
PTPRF-207ENST00000436724 TRPM6Q9BX84 2022 aa20.7■□□□□ 0.9
PTPRF-207ENST00000436724 IGLON5A6NGN9 336 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 OR4F21O95013 312 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 ESRRBO95718 433 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 MLYCDO95822 493 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 PBLDP30039 288 aaPredicted RBP20.69■□□□□ 0.9
PTPRF-207ENST00000436724 ARL1P40616 181 aaPredicted RBP20.69■□□□□ 0.9
PTPRF-207ENST00000436724 RPIAP49247 311 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 COPAP53621 1224 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 DDIASQ8IXT1 998 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 IL17RCQ8NAC3 791 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 RAB7BQ96AH8 199 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 OR2AG1Q9H205 316 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 WWOXQ9NZC7 414 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 PIAS3Q9Y6X2 628 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 NUMA1Q14980 2115 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 CCNT2O60583 730 aaKnown RBP20.69■□□□□ 0.9
PTPRF-207ENST00000436724 RNASEH1O60930 286 aaKnown RBP20.69■□□□□ 0.9
PTPRF-207ENST00000436724 GPC4O75487 556 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 CRCPO75575 148 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 PCDH8O95206 1070 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 LINC00032P0C843 101 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 PREPP48147 710 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 PRLHRP49683 370 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 ERVPABLB-1P60509 514 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 GTF2H2Q13888 395 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 GTF2H2CQ6P1K8 395 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 ZNF765Q7L2R6 523 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 ACTRT2Q8TDY3 377 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 ASZ1Q8WWH4 475 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 ASB11Q8WXH4 323 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 FOXJ1Q92949 421 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 KCNK12Q9HB15 430 aa20.69■□□□□ 0.9
PTPRF-207ENST00000436724 TNPO3Q9Y5L0 923 aaKnown RBP20.69■□□□□ 0.9
PTPRF-207ENST00000436724 MYO10Q9HD67 2058 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 OR7A17O14581 309 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 ADAM23O75077 832 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 ATG13O75143 517 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 RNASEH2AO75792 299 aaKnown RBP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 PIK3R1P27986 724 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 NTSR1P30989 418 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 MXRA7P84157 204 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 DPTQ07507 201 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 ZXDCQ2QGD7 858 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 TCHHL1Q5QJ38 904 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 LETMD1Q6P1Q0 360 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 SCIMPQ6UWF3 145 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 GPRIN3Q6ZVF9 776 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 LARP4Q71RC2 724 aaKnown RBP eCLIP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 TMPRSS6Q8IU80 811 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 CDYL2Q8N8U2 506 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 RDH14Q9HBH5 336 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 BATF3Q9NR55 127 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 ARL15Q9NXU5 204 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 GULP1Q9UBP9 304 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 EIF3FO00303 357 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 COX4I1P13073 169 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 POU3F3P20264 500 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 PGM1P36871 562 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 RPS14P62263 151 aaKnown RBP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 CCDC85BQ15834 202 aaPredicted RBP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 LRIT3Q3SXY7 679 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 SULT1C3Q6IMI6 304 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 ADGRG6Q86SQ4 1221 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 CPSF7Q8N684 471 aaKnown RBP20.68■□□□□ 0.9
PTPRF-207ENST00000436724 SNX31Q8N9S9 440 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 MIEF2Q96C03 454 aa20.68■□□□□ 0.9
PTPRF-207ENST00000436724 CMTM5Q96DZ9 223 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms