RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GTF2F2P13984 249 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 PRDX5P30044 214 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 SH3RF1Q7Z6J0 888 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 POC1BQ8TC44 478 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ISCA1Q9BUE6 129 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF416Q9BWM5 594 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 MTG2Q9H4K7 406 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 NUDT14O95848 222 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 CACNB2Q08289 660 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 HES5Q5TA89 166 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 GDPD1Q8N9F7 314 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 HSFY1Q96LI6 401 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 C2orf49Q9BVC5 232 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 NME7Q9Y5B8 376 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 PCDHGB5Q9Y5G0 923 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 TXNP10599 105 aaKnown RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 BMP6P22004 513 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 CCR4P51679 360 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 MEDAGQ5VYS4 303 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 OR8K5Q8NH50 307 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 DCAKDQ8WVC6 231 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 PPP1R16AQ96I34 528 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 SMYD5Q6GMV2 418 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ZUFSPQ96AP4 578 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ELMO3Q96BJ8 720 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 TIFAQ96CG3 184 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF354BQ96LW1 612 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 CEP295NLQ96MC4 621 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ZFP14Q9HCL3 533 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ZIM2Q9NZV7 527 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 DPP7Q9UHL4 492 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 CNOT6Q9ULM6 557 aaKnown RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 LYPLA1O75608 230 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 CHRM1P11229 460 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 MCCD1P59942 119 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 DSG2Q14126 1118 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 ALG10Q5BKT4 473 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 CHSY3Q70JA7 882 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 ERMP1Q7Z2K6 904 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 ZDHHC21Q8IVQ6 265 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 WNT8BQ93098 351 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 RNF157Q96PX1 679 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 LYARQ9NX58 379 aaKnown RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 SNTG2Q9NY99 539 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 PAHP00439 452 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 CD247P20963 164 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 PSMB4P28070 264 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 SLC41A1Q8IVJ1 513 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 GPR65Q8IYL9 337 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 CCDC54Q8NEL0 328 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 MRI1Q9BV20 369 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 TAS2R10Q9NYW0 307 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 PIM2Q9P1W9 311 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 ADIGQ0VDE8 80 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 IFI44LQ53G44 452 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 MPP7Q5T2T1 576 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 C10orf62Q5T681 223 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 EFCAB12Q6NXP0 572 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 CERS6Q6ZMG9 384 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 SNX20Q7Z614 316 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 FEM1AQ9BSK4 669 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 NDC1Q9BTX1 674 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 SIX4Q9UIU6 781 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 VWA7Q9Y334 891 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 AGAP5A6NIR3 686 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 CXCR6O00574 342 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 PROM1O43490 865 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 TBX4P57082 545 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 KIAA1614Q5VZ46 1190 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 ACOT1Q86TX2 421 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 GAD1Q99259 594 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 ZYG11BQ9C0D3 744 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 WASF2Q9Y6W5 498 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 NDUFB10O96000 172 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 GADD45AP24522 165 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 ETV6P41212 452 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 FOXO4P98177 505 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 NCEH1Q6PIU2 408 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 LRRC70Q7Z2Q7 622 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 GALNT5Q7Z7M9 940 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 LENG8Q96PV6 779 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 KCNS3Q9BQ31 491 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 CDADC1Q9BWV3 514 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 OR51E2Q9H255 320 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 QTRT2Q9H974 415 aaKnown RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 TMEM27Q9HBJ8 222 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 SLC37A4O43826 429 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 APOC3P02656 99 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 TKTL1P51854 596 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 SMSP52788 366 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 DNASE1L3Q13609 305 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 BOP1Q14137 746 aaKnown RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 SEC23BQ15437 767 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 CYP1B1Q16678 543 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 AMIGO1Q86WK6 493 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 HID1Q8IV36 788 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 MMAAQ8IVH4 418 aaKnown RBP12.72□□□□□ -0.37
COL6A3-206ENST00000409809 OR7G1Q8NGA0 311 aa12.72□□□□□ -0.37
COL6A3-206ENST00000409809 TWIST2Q8WVJ9 160 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms