RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 KELP23276 732 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 RPS3P23396 243 aaKnown RBP eCLIP9.04□□□□□ -0.96
VPS53-203ENST00000401468 ACP1P24666 158 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 STX2P32856 288 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 LEPRP48357 1165 aaKnown RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 MGAT5Q09328 741 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 NAB1Q13506 487 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 PTK2BQ14289 1009 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 KYNUQ16719 465 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 BCL7AQ4VC05 210 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 FASTKD1Q53R41 847 aaKnown RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 ZRANB3Q5FWF4 1079 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 UBAP2Q5T6F2 1119 aaKnown RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 TEDDM1Q5T9Z0 273 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 RNF187Q5TA31 235 aaPredicted RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 MRNIPQ6NTE8 343 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 ENPP7Q6UWV6 458 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 C3orf62Q6ZUJ4 267 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 MARK2Q7KZI7 788 aaKnown RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 C11orf96Q7Z7L8 435 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 SLC26A11Q86WA9 606 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 SERPINA9Q86WD7 417 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 PALM2Q8IXS6 379 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 SLC35F3Q8IY50 421 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 GSPT2Q8IYD1 628 aaKnown RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 KYQ8NBH2 561 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 OR6P1Q8NGX9 317 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 CCL4L1Q8NHW4 92 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 MAPK15Q8TD08 544 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 LPGAT1Q92604 370 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 NXPE2Q96DL1 559 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 CCDC97Q96F63 343 aaPredicted RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 PDXPQ96GD0 296 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 ATXN7L3BQ96GX2 97 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 LINC00615Q96LM1 132 aaPredicted RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 WDR92Q96MX6 357 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 ACSS3Q9H6R3 686 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 SMYD2Q9NRG4 433 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 C20orf96Q9NUD7 363 aaPredicted RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 NLGN3Q9NZ94 848 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 FETUBQ9UGM5 382 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 MOSPD1Q9UJG1 213 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 GPR34Q9UPC5 381 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 PIEZO2Q9H5I5 2752 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 MYO18BQ8IUG5 2567 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 PRSS38A1L453 326 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 CCDC151A5D8V7 595 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 KLHL33A6NCF5 533 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 RIPK2O43353 540 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 AP2A2O94973 939 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 GSTM1P09488 218 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 ERVK-10P10266 1014 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 CKMT1AP12532 417 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 CD9P21926 228 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 HTR1BP28222 390 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 GABRB3P28472 473 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 PPARGP37231 505 aaPredicted RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 NSG1P42857 185 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 SLC1A2P43004 574 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 CLCNKAP51800 687 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 PMS2P54278 862 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 GABREP78334 506 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 GSTM4Q03013 218 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 TMEM115Q12893 351 aaPredicted RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 ILF2Q12905 390 aaKnown RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 BRD3Q15059 726 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 UAP1Q16222 522 aaPredicted RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 ALG11Q2TAA5 492 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 PYCR3Q53H96 274 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 HSP90AA5PQ58FG0 334 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 ZNF470Q6ECI4 717 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 XKR5Q6UX68 686 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 LRRC6Q86X45 466 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 ZNF547Q8IVP9 402 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 DENND6AQ8IWF6 608 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 RASGEF1AQ8N9B8 481 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 OR56A4Q8NGH8 313 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 GABPB2Q8TAK5 448 aaPredicted RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.03□□□□□ -0.96
VPS53-203ENST00000401468 RNF31Q96EP0 1072 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 CFAP36Q96G28 342 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 ZNF514Q96K75 400 aaPredicted RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 BIRC8Q96P09 236 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 COPS8Q99627 209 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 DHRS4Q9BTZ2 278 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 BOCQ9BWV1 1114 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 ZCCHC2Q9C0B9 1178 aaKnown RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 ABCG4Q9H172 646 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 GPAMQ9HCL2 828 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 FGF22Q9HCT0 170 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 LATS2Q9NRM7 1088 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 NSMCE4AQ9NXX6 385 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 IL1RAPL1Q9NZN1 696 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 ATXN10Q9UBB4 475 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 CRLS1Q9UJA2 301 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 FBXO5Q9UKT4 447 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 CORO1CQ9ULV4 474 aaPredicted RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 DOLKQ9UPQ8 538 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 SATB2Q9UPW6 733 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 MED16Q9Y2X0 877 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms