RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SAV1Q9H4B6 383 aaPredicted RBP9.18□□□□□ -0.94
COL28A1-201ENST00000399429 GRIP1Q9Y3R0 1128 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF195O14628 629 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ARHGEF15O94989 841 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 MYCP01106 439 aaPredicted RBP9.18□□□□□ -0.94
COL28A1-201ENST00000399429 USP17L7P0C7H9 530 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 SLC2A2P11168 524 aaPredicted RBP9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ATF6P18850 670 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 POLD2P49005 469 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 HERVK_113P63132 956 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 CDK5R2Q13319 367 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 AQP6Q13520 282 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 USP41Q3LFD5 358 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 CYS1Q717R9 158 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF438Q7Z4V0 828 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 PIM3Q86V86 326 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 VSIG10LQ86VR7 867 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 TP53INP1Q96A56 240 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ERVK-6Q9BXR3 956 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 SLC7A5P2Q9GIP4 190 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF408Q9H9D4 720 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 LTB4R2Q9NPC1 389 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 KLHL1Q9NR64 748 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 SH3BP4Q9P0V3 963 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 MLXQ9UH92 298 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 POLHQ9Y253 713 aa9.18□□□□□ -0.94
COL28A1-201ENST00000399429 ULK1O75385 1050 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CNTN5O94779 1100 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 FABP3P05413 133 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PPP3CCP48454 512 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 P2RX3P56373 397 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 GABARAPL2P60520 117 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 POU6F2P78424 691 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 SPIBQ01892 262 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 MAD2L1Q13257 205 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 STEAP4Q687X5 459 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ENPP6Q6UWR7 440 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ASB18Q6ZVZ8 466 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 RETREG3Q86VR2 466 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 EPHX4Q8IUS5 362 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CACTIN-AS1Q8N1I8 211 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 BPIFB1Q8TDL5 484 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 MAP6Q96JE9 813 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PANX1Q96RD7 426 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 MEAF6Q9HAF1 191 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CLEC4AQ9UMR7 237 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 USP22Q9UPT9 525 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 SNX10Q9Y5X0 201 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 LMO7Q8WWI1 1683 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 FAM234BA2RU67 622 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 KIAA0513O60268 411 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 MYL3P08590 195 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CD72P21854 359 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CA5AP35218 305 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ADRA1BP35368 520 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF81P51508 661 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ACLYP53396 1101 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PTPRNQ16849 979 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 UGT8Q16880 541 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 SLC25A52Q3SY17 297 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 C11orf88Q6PI97 169 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 MAMDC4Q6UXC1 1216 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 STRADAQ7RTN6 431 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PHACTR4Q8IZ21 702 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ASB7Q9H672 318 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 SPASTQ9UBP0 616 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PFDN2Q9UHV9 154 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 TIMM13Q9Y5L4 95 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 OR51F1A6NGY5 319 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 MOXD2PA6NHM9 499 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 LRRC14BA6NHZ5 514 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 A8MUA0 341 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ATP6V1G2-DDX39BF2Z307 99 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 F8W810 466 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 IFNA7P01567 189 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 HIST1H2AGP0C0S8 130 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 TNNI3P19429 210 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 HIST1H2ADP20671 130 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 SLC16A1P53985 500 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 IL2P60568 153 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 TWF1Q12792 350 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 DGKZQ13574 1117 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CPSF6Q16630 551 aaKnown RBP eCLIP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 SMN1Q16637 294 aaKnown RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 AKIRIN2Q53H80 203 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 TBPL2Q6SJ96 375 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 BPHLQ86WA6 291 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 FAM217AQ8IXS0 508 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 SLC13A3Q8WWT9 602 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 AP3S1Q92572 193 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 HIST1H2AHQ96KK5 128 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ZNF641Q96N77 438 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 RDH12Q96NR8 316 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 NSUN5Q96P11 429 aaKnown RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 HIST1H2AJQ99878 128 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 H2AFJQ9BTM1 129 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 H2AFY2Q9P0M6 372 aaPredicted RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 ABCG2Q9UNQ0 655 aa9.17□□□□□ -0.94
COL28A1-201ENST00000399429 PIN4Q9Y237 131 aaKnown RBP9.17□□□□□ -0.94
COL28A1-201ENST00000399429 CHURC1-FNTBB4DL54 471 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms