RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TMEM159Q96B96 161 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 BIRC8Q96P09 236 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 ZMYND15Q9H091 742 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 SEMA6CQ9H3T2 930 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 CCDC86Q9H6F5 360 aaKnown RBP21.21■□□□□ 0.99
CLN3-207ENST00000395653 POLR1BQ9H9Y6 1135 aa21.21■□□□□ 0.99
CLN3-207ENST00000395653 IGF2RP11717 2491 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 IGHV5-10-1A0A0J9YXX1 117 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 E7ESA3 106 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 H3BMM5 538 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 ESR1P03372 595 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 THRAP10827 490 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 HOXB3P14651 431 aaPredicted RBP21.2■□□□□ 0.98
CLN3-207ENST00000395653 CCR7P32248 378 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 MAPK9P45984 424 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 LSSP48449 732 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 GABREP78334 506 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 C3orf38Q5JPI3 329 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 CTSL3PQ5NE16 218 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 PHF19Q5T6S3 580 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 KCNMB4Q86W47 210 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 MNS1Q8NEH6 495 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 ASZ1Q8WWH4 475 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 NCSTNQ92542 709 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 FAM167BQ9BTA0 163 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 KIR3DX1Q9H7L2 352 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 GRHL1Q9NZI5 618 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 OGFRQ9NZT2 677 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 PDP2Q9P2J9 529 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 ZC3H7BQ9UGR2 993 aaKnown RBP21.2■□□□□ 0.98
CLN3-207ENST00000395653 SATB2Q9UPW6 733 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 CHMP2BQ9UQN3 213 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 PCDHGA8Q9Y5G5 932 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 AK5Q9Y6K8 562 aa21.2■□□□□ 0.98
CLN3-207ENST00000395653 A0A1W2PNU3 283 aaPredicted RBP21.19■□□□□ 0.98
CLN3-207ENST00000395653 IQCF5A8MTL0 148 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 S1PR4O95977 384 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 MPOP05164 745 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 AMD1P17707 334 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 ITGB6P18564 788 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 CAPZBP47756 277 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 CYP4F3Q08477 520 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 BRD3Q15059 726 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 HSP90AA5PQ58FG0 334 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 C8orf74Q6P047 294 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 IGF2-ASQ6U949 168 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 RAB11FIP2Q7L804 512 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 PLXDC1Q8IUK5 500 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 DENND6AQ8IWF6 608 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 LSMEM2Q8N112 164 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 KRT222Q8N1A0 295 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 KDF1Q8NAX2 398 aaPredicted RBP21.19■□□□□ 0.98
CLN3-207ENST00000395653 GABPB2Q8TAK5 448 aaPredicted RBP21.19■□□□□ 0.98
CLN3-207ENST00000395653 MDM1Q8TC05 714 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 TFGQ92734 400 aaPredicted RBP21.19■□□□□ 0.98
CLN3-207ENST00000395653 CCDC74BQ96LY2 380 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 WDR83Q9BRX9 315 aaKnown RBP21.19■□□□□ 0.98
CLN3-207ENST00000395653 SLC24A2Q9UI40 661 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 CRYL1Q9Y2S2 319 aa21.19■□□□□ 0.98
CLN3-207ENST00000395653 MN1Q10571 1320 aaPredicted RBP21.18■□□□□ 0.98
CLN3-207ENST00000395653 HGSO14964 777 aaPredicted RBP21.18■□□□□ 0.98
CLN3-207ENST00000395653 KPNA5O15131 536 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 GPC4O75487 556 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 APOA4P06727 396 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 AOAHP28039 575 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 ACADLP28330 430 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 FMO4P31512 558 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 SLC1A2P43004 574 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 CAV1Q03135 178 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 PDIA2Q13087 525 aaKnown RBP21.18■□□□□ 0.98
CLN3-207ENST00000395653 CTBP1Q13363 440 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 KRT33BQ14525 404 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 PLCL1Q15111 1095 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 TMED2Q15363 201 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 ZNF789Q5FWF6 425 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 STEAP4Q687X5 459 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 KLHL35Q6PF15 583 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 NAPRTQ6XQN6 538 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 UNC5AQ6ZN44 842 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 SLC22A15Q8IZD6 547 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 UNC5BQ8IZJ1 945 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 CERS2Q96G23 380 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 CMKLR1Q99788 373 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 MVB12BQ9H7P6 319 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 PLAC1Q9HBJ0 212 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 TMEM9Q9P0T7 183 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 CDYLQ9Y232 598 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 FREM2Q5SZK8 3169 aa21.18■□□□□ 0.98
CLN3-207ENST00000395653 BHMG1C9JSJ3 638 aaPredicted RBP21.17■□□□□ 0.98
CLN3-207ENST00000395653 DXOO77932 396 aaKnown RBP21.17■□□□□ 0.98
CLN3-207ENST00000395653 PKMP14618 531 aaKnown RBP21.17■□□□□ 0.98
CLN3-207ENST00000395653 TYRP1P17643 537 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 MLLT3P42568 568 aaPredicted RBP21.17■□□□□ 0.98
CLN3-207ENST00000395653 HSPA14Q0VDF9 509 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 HP1BP3Q5SSJ5 553 aaPredicted RBP21.17■□□□□ 0.98
CLN3-207ENST00000395653 MMGT1Q8N4V1 131 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 ACVR1CQ8NER5 493 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 ZCCHC14Q8WYQ9 949 aaKnown RBP21.17■□□□□ 0.98
CLN3-207ENST00000395653 RSC1A1Q92681 617 aa21.17■□□□□ 0.98
CLN3-207ENST00000395653 ART4Q93070 314 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms