RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 MAP9Q49MG5 647 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CES3Q6UWW8 571 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 KDM7AQ6ZMT4 941 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 PRR23BQ6ZRT6 265 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 RAB44Q7Z6P3 723 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ANKMY2Q8IV38 441 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 PALM2Q8IXS6 379 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 DENND1AQ8TEH3 1009 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ASZ1Q8WWH4 475 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 TSACCQ96A04 125 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 TLCD1Q96CP7 247 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SEC16BQ96JE7 1060 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 RHOXF2Q9BQY4 288 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 TRIM31Q9BZY9 425 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 MRPL40Q9NQ50 206 aaKnown RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 GALPQ9UBC7 116 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 DKK4Q9UBT3 224 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 WDR37Q9Y2I8 494 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 OARD1Q9Y530 152 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 MATN2O00339 956 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CCL22O00626 93 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 RASGRF2O14827 1237 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 BUD23O43709 281 aaKnown RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 NDUFS3O75489 264 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ALPPL2P10696 532 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CKMT2P17540 419 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 DUSP3P51452 185 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ATP6V0D1P61421 351 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SMAD1Q15797 465 aaKnown RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SLC5A12Q1EHB4 618 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 TEX35Q5T0J7 233 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SBSNQ6UWP8 590 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CACUL1Q86Y37 369 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CHCHD4Q8N4Q1 142 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ARHGEF39Q8N4T4 335 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 NAT6Q93015 286 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SH3KBP1Q96B97 665 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 DCUN1D1Q96GG9 259 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CD180Q99467 661 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 RAB11FIP5Q9BXF6 653 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 FAM96AQ9H5X1 160 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CARS2Q9HA77 564 aaKnown RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 EVA1BQ9NVM1 165 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 PSD3Q9NYI0 1048 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CD1DP15813 335 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CCKBRP32239 447 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SLC6A12P48065 614 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 GABRA4P48169 554 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 RAB10P61026 200 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SHC2P98077 582 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SPEM2Q0P670 501 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ILF3Q12906 894 aaKnown RBP eCLIP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 BNIP3Q12983 259 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SLC29A2Q14542 456 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SF3A2Q15428 464 aaKnown RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 RBM20Q5T481 1227 aaKnown RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 STRA8Q7Z7C7 330 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SLC9B2Q86UD5 537 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 KMT5CQ86Y97 462 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CEP97Q8IW35 865 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SLC35F3Q8IY50 421 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CENPLQ8N0S6 344 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ACVR1CQ8NER5 493 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 OR2L8Q8NGY9 312 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ZDHHC1Q8WTX9 485 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 KLHL6Q8WZ60 621 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 KIAA1191Q96A73 305 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 FBXL8Q96CD0 374 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 C9orf72Q96LT7 481 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 PAFAH2Q99487 392 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SGPP1Q9BX95 441 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CYP4F12Q9HCS2 524 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 TAS2R13Q9NYV9 303 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ZFATQ9P243 1243 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 PSMC3IPQ9P2W1 217 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ABCA7Q8IZY2 2146 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 FAM95CA0A1B0GW59 222 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 A0A1W2PPV9 198 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 SBK3P0C264 359 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 IDSP22304 550 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 CASP2P42575 452 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 GNPDA1P46926 289 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 SERPINB8P50452 374 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 PDX1P52945 283 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 EMP3P54852 163 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 CTBP1Q13363 440 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 VRK3Q8IV63 474 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 DEFB119Q8N690 84 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 DCBLD1Q8N8Z6 715 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 OR56A3Q8NH54 315 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 STON2Q8WXE9 905 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 TMEM159Q96B96 161 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 CFAP36Q96G28 342 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 ATOH8Q96SQ7 321 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 PITHD1Q9GZP4 211 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-202ENST00000394943 SYTL2Q9HCH5 934 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 FBXO6Q9NRD1 293 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-202ENST00000394943 MTO1Q9Y2Z2 717 aaKnown RBP6.84□□□□□ -1.31
LIMA1-202ENST00000394943 ENTPD2Q9Y5L3 495 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms