RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 DLG3Q92796 817 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 TSACCQ96A04 125 aaPredicted RBP19.48■□□□□ 0.71
CLN3-205ENST00000359984 MANSC1Q9H8J5 431 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 CARS2Q9HA77 564 aaKnown RBP19.48■□□□□ 0.71
CLN3-205ENST00000359984 GPR27Q9NS67 375 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 GPSM3Q9Y4H4 160 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 ABCA7Q8IZY2 2146 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 SYCE1LA8MT33 242 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 A8MT66 165 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 SCAMP1O15126 338 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 TPBGLP0DKB5 382 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 PLOD1Q02809 727 aaPredicted RBP19.48■□□□□ 0.71
CLN3-205ENST00000359984 PPP1R3AQ16821 1122 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 CES4AQ5XG92 561 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 RGS9BPQ6ZS82 235 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 BMP8AQ7Z5Y6 402 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 KLHDC7BQ96G42 594 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 TIMM29Q9BSF4 260 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 KLQ9UEF7 1012 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 PLEKHM1Q9Y4G2 1056 aa19.48■□□□□ 0.71
CLN3-205ENST00000359984 A0A1W2PR77 199 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 KLHL33A6NCF5 533 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 TCP11X1B4DZS4 312 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 SUPT3HB4E1H0 165 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 H3BM21 787 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 TRIM13O60858 407 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 SUPT3HO75486 399 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 MATN4O95460 622 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 SRP54P61011 504 aaKnown RBP19.47■□□□□ 0.71
CLN3-205ENST00000359984 ABRQ12979 859 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 PHKG1Q16816 387 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 ALG11Q2TAA5 492 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 LIPMQ5VYY2 423 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 METRNLQ641Q3 311 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 ZCCHC23Q6ZST2 131 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 RASGRP3Q8IV61 690 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 TRIM42Q8IWZ5 723 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 C1orf216Q8TAB5 229 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 FAM174AQ8TBP5 190 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 OR2M4Q96R27 311 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 MIR1-1HGQ9H1L0 117 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 DPEP2Q9H4A9 486 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 KLC4Q9NSK0 619 aa19.47■□□□□ 0.71
CLN3-205ENST00000359984 UTP6Q9NYH9 597 aaKnown RBP19.47■□□□□ 0.71
CLN3-205ENST00000359984 GFYI3L273 518 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 SMIM24O75264 130 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 IPO13O94829 963 aaKnown RBP19.46■□□□□ 0.71
CLN3-205ENST00000359984 C8GP07360 202 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 SEC24CP53992 1094 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 PRKAA2P54646 552 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 RACK1P63244 317 aaKnown RBP19.46■□□□□ 0.71
CLN3-205ENST00000359984 DMPKQ09013 629 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 RPA4Q13156 261 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 SRSF5Q13243 272 aaKnown RBP19.46■□□□□ 0.71
CLN3-205ENST00000359984 PTK2BQ14289 1009 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 TGFBIQ15582 683 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 RD3Q7Z3Z2 195 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 MFSD2AQ8NA29 543 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 OR6Y1Q8NGX8 325 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 DNASE2BQ8WZ79 361 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 PHF21BQ96EK2 531 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 ZNF317Q96PQ6 595 aaPredicted RBP19.46■□□□□ 0.71
CLN3-205ENST00000359984 TM9SF3Q9HD45 589 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 KCNK6Q9Y257 313 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 OARD1Q9Y530 152 aa19.46■□□□□ 0.71
CLN3-205ENST00000359984 SPTY2D1-AS1A0A0U1RR47 76 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 WNT1P04628 370 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 CD38P28907 300 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 DNAJB13P59910 316 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 PFKFB4Q16877 469 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 FOXR1Q6PIV2 292 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 UBE2R2Q712K3 238 aaPredicted RBP19.45■□□□□ 0.7
CLN3-205ENST00000359984 ARMCX6Q7L4S7 300 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 LPCAT2Q7L5N7 544 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 SLC22A9Q8IVM8 553 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 PPP1R14CQ8TAE6 165 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 CCDC126Q96EE4 140 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 SLC12A9Q9BXP2 914 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 OR52A5Q9H2C5 316 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 NCKIPSDQ9NZQ3 722 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 FBXO4Q9UKT5 387 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 ST14Q9Y5Y6 855 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 GON4LQ3T8J9 2241 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 NCF1BA6NI72 391 aaPredicted RBP19.45■□□□□ 0.7
CLN3-205ENST00000359984 PRR19A6NJB7 356 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 NCF1CA8MVU1 366 aaPredicted RBP19.45■□□□□ 0.7
CLN3-205ENST00000359984 KLF11O14901 512 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 GPR37L1O60883 481 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 GFAPP14136 432 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 NCF1P14598 390 aaPredicted RBP19.45■□□□□ 0.7
CLN3-205ENST00000359984 VCLP18206 1134 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 NFKB2Q00653 900 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 BST1Q10588 318 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 EIF2B5Q13144 721 aaKnown RBP19.45■□□□□ 0.7
CLN3-205ENST00000359984 FZD2Q14332 565 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 LAYNQ6UX15 382 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 FRA10AC1Q70Z53 315 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 HID1Q8IV36 788 aa19.45■□□□□ 0.7
CLN3-205ENST00000359984 PTGR2Q8N8N7 351 aaPredicted RBP19.45■□□□□ 0.7
CLN3-205ENST00000359984 CFAP61Q8NHU2 1237 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms