RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 TBC1D3GQ6DHY5 549 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 TBC1D3CQ6IPX1 549 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 ZC3H3Q8IXZ2 948 aaKnown RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 TBC1D3Q8IZP1 549 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 CLHC1Q8NHS4 586 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 ASB9Q96DX5 294 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 CAMK1GQ96NX5 476 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 TCF25Q9BQ70 676 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 EFCAB11Q9BUY7 163 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 KCNN2Q9H2S1 579 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 TMEM138Q9NPI0 162 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 MAT2BQ9NZL9 334 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 ZIM2Q9NZV7 527 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 FKBPLQ9UIM3 349 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 RIIAD1A6NNX1 92 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 VIPP01282 170 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 SLC35G6P0C7Q6 338 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 CYP4B1P13584 511 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 PRPS1L1P21108 318 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 POM121L1PQ3SYA9 428 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 CDCA2Q69YH5 1023 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 SLC39A4Q6P5W5 647 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 RFWD3Q6PCD5 774 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 ISLR2Q6UXK2 745 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 CLEC20AQ6ZU45 233 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 AKAP14Q86UN6 197 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 OR10H5Q8NGA6 315 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 C9orf43Q8TAL5 461 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 RIT1Q92963 219 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 ACAT2Q9BWD1 397 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 USP29Q9HBJ7 922 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 GDAP2Q9NXN4 497 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 CKLFQ9UBR5 152 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 PCDHGC4Q9Y5F7 938 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 TRPM3Q9HCF6 1732 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 KHDRBS3O75525 346 aaKnown RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 REM1O75628 298 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 METTL18O95568 372 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 FADS2O95864 444 aaKnown RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 AP3S2P59780 193 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 SIM2Q14190 667 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 KCNJ11Q14654 390 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 ZNF311Q5JNZ3 666 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 SLC25A24Q6NUK1 477 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 TRMT10BQ6PF06 316 aaKnown RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 RANBP3LQ86VV4 465 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 CPNE9Q8IYJ1 553 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 LIX1Q8N485 282 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 CAPSLQ8WWF8 208 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 SMG7Q92540 1137 aaKnown RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 ZBED6CLQ96FA7 236 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 KAT8Q9H7Z6 458 aaKnown RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 TUBA8Q9NY65 449 aaPredicted RBP11.58□□□□□ -0.56
COL9A1-202ENST00000357250 U3KQV3 271 aa11.58□□□□□ -0.56
COL9A1-202ENST00000357250 KCNE1P15382 129 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 CD247P20963 164 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 LMO2P25791 158 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 FOXN2P32314 431 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 ARFIP1P53367 373 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 SLC18A2Q05940 514 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 FAM171BQ6P995 826 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 FAM131AQ6UXB0 335 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 PIK3R3Q92569 461 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 PPP1R14BQ96C90 147 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 TMEM209Q96SK2 561 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 SLC29A3Q9BZD2 475 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 GALNT8Q9NY28 637 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 EIF2B4Q9UI10 523 aaKnown RBP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 A8MUI8 341 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 CLDN25C9JDP6 229 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 OR5F1O95221 314 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 H6PDO95479 791 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 ATXN1P54253 815 aaKnown RBP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 CAP1Q01518 475 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 NRG1Q02297 640 aaPredicted RBP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 SCN1BQ07699 218 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 PAFAH1B3Q15102 231 aaKnown RBP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 ZBTB6Q15916 424 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 C6orf52Q5T4I8 152 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 SH3PXD2AQ5TCZ1 1133 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 ZDHHC21Q8IVQ6 265 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 GPATCH1Q9BRR8 931 aaKnown RBP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 TRMT13Q9NUP7 481 aaKnown RBP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 GON4LQ3T8J9 2241 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 NUP188Q5SRE5 1749 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 FAM240BA0A1B0GVZ2 78 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 PEX2P28328 305 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 MSX2P35548 267 aaPredicted RBP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 TIE1P35590 1138 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 MNDAP41218 407 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 NRLP54845 237 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 ILF3Q12906 894 aaKnown RBP eCLIP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 PPIGQ13427 754 aaKnown RBP eCLIP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 KLHL22Q53GT1 634 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 CWF19L1Q69YN2 538 aaKnown RBP11.57□□□□□ -0.56
COL9A1-202ENST00000357250 SLC9A4Q6AI14 798 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 LAPTM4BQ86VI4 370 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 AHI1Q8N157 1196 aa11.57□□□□□ -0.56
COL9A1-202ENST00000357250 FBXO22Q8NEZ5 403 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms