RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ZFP28Q8NHY6 868 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 HM13Q8TCT9 377 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 EEF1AKMT1Q8WVE0 214 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ASB9Q96DX5 294 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 MOCOSQ96EN8 888 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 LINGO1Q96FE5 620 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 SLC30A3Q99726 388 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 KXD1Q9BQD3 176 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ERVK-6Q9BXR3 956 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 FAM83DQ9H4H8 585 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ZNF385DQ9H6B1 395 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ZBTB26Q9HCK0 441 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 SARS2Q9NP81 518 aaKnown RBP12.62□□□□□ -0.39
CLK3-201ENST00000345005 TBCCD1Q9NVR7 557 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 UBAP1Q9NZ09 502 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 ZDHHC2Q9UIJ5 367 aa12.62□□□□□ -0.39
CLK3-201ENST00000345005 COL6A3P12111 3177 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 KPNA3O00505 521 aaPredicted RBP12.61□□□□□ -0.39
CLK3-201ENST00000345005 ECI2O75521 394 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 SLC25A14O95258 325 aaPredicted RBP12.61□□□□□ -0.39
CLK3-201ENST00000345005 TSPAN12O95859 305 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 ZNF23P17027 643 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 RGS4P49798 205 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 NUP107P57740 925 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 NAA20P61599 178 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 ZNF234Q14588 700 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 CRY1Q16526 586 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 LSM12Q3MHD2 195 aaKnown RBP12.61□□□□□ -0.39
CLK3-201ENST00000345005 ITPRIPL2Q3MIP1 535 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 ATP13A5Q4VNC0 1218 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 ZNF678Q5SXM1 525 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 SERPINA13PQ6UXR4 307 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 TRIML2Q8N7C3 387 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 BHLHE22Q8NFJ8 381 aaPredicted RBP12.61□□□□□ -0.39
CLK3-201ENST00000345005 SUSD6Q92537 303 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 LRCH3Q96II8 777 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 CNBD2Q96M20 576 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 ASB2Q96Q27 587 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 COPS8Q99627 209 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 BOCQ9BWV1 1114 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 ACSS2Q9NR19 701 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 LATS2Q9NRM7 1088 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 GTSE1Q9NYZ3 720 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 NFKBIL1Q9UBC1 381 aaPredicted RBP12.61□□□□□ -0.39
CLK3-201ENST00000345005 SUN2Q9UH99 717 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 RSL24D1Q9UHA3 163 aaKnown RBP12.61□□□□□ -0.39
CLK3-201ENST00000345005 PTBP2Q9UKA9 531 aaKnown RBP12.61□□□□□ -0.39
CLK3-201ENST00000345005 CDH23Q9H251 3354 aa12.61□□□□□ -0.39
CLK3-201ENST00000345005 IQCF5A8MTL0 148 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 SUPT3HB4E1H0 165 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 UBXN8O00124 270 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 BTN3A1O00481 513 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 SUPT3HO75486 399 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 MTHFD2P13995 350 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 GFAPP14136 432 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 DGKAP23743 735 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 ITGB7P26010 798 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 GDI1P31150 447 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 CCR10P46092 362 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 CDK9P50750 372 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 THOP1P52888 689 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 MRPS22P82650 360 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 ELAVL3Q14576 367 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 TSNQ15631 228 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 PFKFB4Q16877 469 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 RFLNAQ6ZTI6 216 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 HSD11B1LQ7Z5J1 315 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 DSG4Q86SJ6 1040 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 RAVER1Q8IY67 606 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 CPNE9Q8IYJ1 553 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 CLDN19Q8N6F1 224 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 PTGR2Q8N8N7 351 aaPredicted RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 TSPAN14Q8NG11 270 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 CEP70Q8NHQ1 597 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 AGR3Q8TD06 166 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 EXT2Q93063 718 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 FUBP1Q96AE4 644 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 EME1Q96AY2 570 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 ZNF597Q96LX8 424 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 PRPF18Q99633 342 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 TRMT61BQ9BVS5 477 aaKnown RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 SHCBP1LQ9BZQ2 653 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 TMEM245Q9H330 911 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 ZNF576Q9H609 170 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 COPS7BQ9H9Q2 264 aaPredicted RBP12.6□□□□□ -0.39
CLK3-201ENST00000345005 PNPLA3Q9NST1 481 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 KLHL42Q9P2K6 505 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 PRSS21Q9Y6M0 314 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 TICRRQ7Z2Z1 1910 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 IGLV3-16A0A075B6K0 115 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 PSMD11O00231 422 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 CDC7O00311 574 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 SUPT7LO94864 414 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 OR6B1O95007 311 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 KAT7O95251 611 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 TRIM16O95361 564 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 H6PDO95479 791 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 APODP05090 189 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 C8BP07358 591 aa12.6□□□□□ -0.39
CLK3-201ENST00000345005 HLA-EP13747 358 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms