RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 IL27RAQ6UWB1 636 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 SLC22A16Q86VW1 577 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 MON1AQ86VX9 555 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 GPSM1Q86YR5 675 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 OR8J3Q8NGG0 315 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 OR10A6Q8NH74 314 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 METTL6Q8TCB7 284 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 MYEOVQ96EZ4 313 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 CCDC115Q96NT0 180 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 SMIM14Q96QK8 99 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 TRIB3Q96RU7 358 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 NODALQ96S42 347 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 IKZF5Q9H5V7 419 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 USE1Q9NZ43 259 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ANKMY1Q9P2S6 941 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ANKRD36A6QL64 1941 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 LOC100130705A0A1B0GUX0 176 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 SLC1A7O00341 560 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 GMNNO75496 209 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ITIH1P19827 911 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 HOXC8P31273 242 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ARL1P40616 181 aaPredicted RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 PCYT1AP49585 367 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 GPR15P49685 360 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 EFEMP1Q12805 493 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ADPRMQ3LIE5 342 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 SPESP1Q6UW49 350 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 TMEM179BQ7Z7N9 219 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 FRS2Q8WU20 508 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 NSMCE3Q96MG7 304 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 CTRCQ99895 268 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 RBM4BQ9BQ04 359 aaKnown RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 RBM4Q9BWF3 364 aaKnown RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 WDR12Q9GZL7 423 aaKnown RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 MAGEE1Q9HCI5 957 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ERVK-11Q9UQG0 969 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 NAALAD2Q9Y3Q0 740 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 SNX5Q9Y5X3 404 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 PATJQ8NI35 1801 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 GSTA4O15217 222 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 PRAMEF11O60813 436 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 NDST3O95803 873 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 SERPINF2P08697 491 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 OR1E1P30953 314 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 EPS8Q12929 822 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 KIAA0040Q15053 153 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 DDR2Q16832 855 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 C18orf21Q32NC0 220 aaPredicted RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 PARP15Q460N3 678 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 LDLRAD1Q5T700 205 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 PLEKHG7Q6ZR37 379 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 PIANPQ8IYJ0 282 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ABI1Q8IZP0 508 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ZNF548Q8NEK5 533 aaPredicted RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 LINGO1Q96FE5 620 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 SLC47A1Q96FL8 570 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 MS4A4AQ96JQ5 239 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 RPRD1AQ96P16 312 aaPredicted RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 CCDC90BQ9GZT6 254 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ACTR8Q9H981 624 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 ABI2Q9NYB9 513 aaPredicted RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 SCML2Q9UQR0 700 aa13.23□□□□□ -0.29
SKA3-202ENST00000314759 POLR3HQ9Y535 204 aaPredicted RBP13.23□□□□□ -0.29
SKA3-202ENST00000314759 A6NL46 340 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 GNGT2O14610 69 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 NDUFS2O75306 463 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 PRKD3O94806 890 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 ZNF865P0CJ78 1059 aaPredicted RBP13.22□□□□□ -0.29
SKA3-202ENST00000314759 EMX1Q04741 257 aaPredicted RBP13.22□□□□□ -0.29
SKA3-202ENST00000314759 NR6A1Q15406 480 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 AP5B1Q2VPB7 878 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 SLC39A12Q504Y0 691 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 AFTPHQ6ULP2 937 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 TTC30BQ8N4P2 665 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 AADATQ8N5Z0 425 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 MDGA1Q8NFP4 955 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 ZBED2Q9BTP6 218 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 THUMPD3Q9BV44 507 aaKnown RBP13.22□□□□□ -0.29
SKA3-202ENST00000314759 FLRT1Q9NZU1 646 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 M0QZ92 97 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 HS6ST1O60243 411 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 NADKO95544 446 aaPredicted RBP13.22□□□□□ -0.29
SKA3-202ENST00000314759 CHRNA1P02708 482 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 CPT1AP50416 773 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 IL2P60568 153 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 CTSL3PQ5NE16 218 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 PSAPL1Q6NUJ1 521 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 MIB1Q86YT6 1006 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 ZCCHC7Q8N3Z6 543 aaKnown RBP13.22□□□□□ -0.29
SKA3-202ENST00000314759 SVOPLQ8N434 492 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 CD200R1Q8TD46 325 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 RHBDF1Q96CC6 855 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 VMP1Q96GC9 406 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 TBCDQ9BTW9 1192 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 TRMT6Q9UJA5 497 aaKnown RBP13.22□□□□□ -0.29
SKA3-202ENST00000314759 FBXO10Q9UK96 956 aa13.22□□□□□ -0.29
SKA3-202ENST00000314759 GBF1Q92538 1859 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 DRGXA6NNA5 263 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 ZNF99A8MXY4 864 aaPredicted RBP13.21□□□□□ -0.29
SKA3-202ENST00000314759 PSMD11O00231 422 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms