RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SUSD4Q5VX71 490 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 FOXR1Q6PIV2 292 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 USP17L6PQ6QN14 398 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SERPINA13PQ6UXR4 307 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 HDDC3Q8N4P3 179 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 B3GALNT2Q8NCR0 500 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 TMEM161BQ8NDZ6 487 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 LNX1Q8TBB1 728 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ADAMTS14Q8WXS8 1223 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PCIF1Q9H4Z3 704 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ATP13A3Q9H7F0 1226 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 METTL8Q9H825 291 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ZBTB26Q9HCK0 441 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 AGO4Q9HCK5 861 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 IMP3Q9NV31 184 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 MOCS1Q9NZB8 636 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SSC5DA1L4H1 1573 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 RNASEH2AO75792 299 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PCDH8O95206 1070 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PGK1P00558 417 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PGRP06401 933 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 CHRNGP07510 517 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 IRF1P10914 325 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 TLX1P31314 330 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 GRIA4P48058 902 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 GJA9P57773 515 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 NR6A1Q15406 480 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PUS10Q3MIT2 529 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PET117Q6UWS5 81 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 KBTBD2Q8IY47 623 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ADGRF2Q8IZF7 708 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 BEND7Q8N7W2 519 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF540Q8NDQ6 660 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 OR7D4Q8NG98 312 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 TAS1R2Q8TE23 839 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PABPC5Q96DU9 382 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 TXNDC15Q96J42 360 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 NIFKQ9BYG3 293 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 BTBD1Q9H0C5 482 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 GBA3Q9H227 469 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SMURF1Q9HCE7 757 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 OSGEPQ9NPF4 335 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SEMA3GQ9NS98 782 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 OR5H15A6NDH6 313 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 OR5H14A6NHG9 310 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 OR5H1A6NKK0 313 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 FAM155AB1AL88 458 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 HSBP1L1C9JCN9 74 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PITPNM1O00562 1244 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PIP5K1CO60331 668 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 CYP11A1P05108 521 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ANXA3P12429 323 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 TCF7P36402 384 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 CYCSP99999 105 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PPP3CAQ08209 521 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 RASGEF1BQ0VAM2 473 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 USP4Q13107 963 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 CREB3L2Q70SY1 520 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 GALNTL5Q7Z4T8 443 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 RGL4Q8IZJ4 473 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF527Q8NB42 609 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 COLGALT1Q8NBJ5 622 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ABHD5Q8WTS1 349 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 TCEAL4Q96EI5 215 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SNX27Q96L92 541 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SLC30A2Q9BRI3 323 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ZYG11BQ9C0D3 744 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 TKTL2Q9H0I9 626 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ABCG4Q9H172 646 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PCYT1BQ9Y5K3 369 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SNX10Q9Y5X0 201 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 MYH4Q9Y623 1939 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 GTF3C1Q12789 2109 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 A0A0G2JPF8 293 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 HNRNPCL3B7ZW38 293 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 H7C2Y5 167 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 NR5A2O00482 541 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PLD2O14939 933 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PPM1BO75688 479 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF682O95780 498 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 IL3P08700 152 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ZNF806P0C7X5 589 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 HNRNPCL4P0DMR1 293 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 CHRM3P20309 590 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 HRH2P25021 359 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 ACSL1P33121 698 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 GPR15P49685 360 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 CLK2P49760 499 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 DYNLL1P63167 89 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 DDX39BQ13838 428 aaKnown RBP5.17□□□□□ -1.58
SCN1A-201ENST00000303395 RAB39AQ14964 217 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 FBXO47Q5MNV8 452 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 GARNL3Q5VVW2 1013 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SLC9A4Q6AI14 798 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 TMC8Q8IU68 726 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 SCML4Q8N228 414 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 OXR1Q8N573 874 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 OR2L3Q8NG85 312 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 PCDH19Q8TAB3 1148 aa5.17□□□□□ -1.58
SCN1A-201ENST00000303395 GPR22Q99680 433 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms