RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 NTSR1P30989 418 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 CAMK2GQ13555 558 aaPredicted RBP16.17■□□□□ 0.18
USP4-201ENST00000265560 GRB7Q14451 532 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 SYTL3Q4VX76 610 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 SGO1Q5FBB7 561 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 GOLGA7Q7Z5G4 137 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 PHYKPLQ8IUZ5 450 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 CLYBLQ8N0X4 340 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 HCAR2Q8TDS4 363 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 C19orf60Q96EN9 201 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 CAAP1Q9H8G2 361 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 IPPKQ9H8X2 491 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.17■□□□□ 0.18
USP4-201ENST00000265560 TAGLN3Q9UI15 199 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 KLK8O60259 260 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 RPS14P62263 151 aaKnown RBP16.17■□□□□ 0.18
USP4-201ENST00000265560 WSCD2Q2TBF2 565 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 FAM46CQ5VWP2 391 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 HEATR4Q86WZ0 1026 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 TMEM79Q9BSE2 394 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 AKTIPQ9H8T0 292 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 SMOXQ9NWM0 555 aa16.17■□□□□ 0.18
USP4-201ENST00000265560 COPG1Q9Y678 874 aaKnown RBP16.17■□□□□ 0.18
USP4-201ENST00000265560 FRYLO94915 3013 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 A0A1W2PQF6 199 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 PEX11AO75192 247 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 ZNF8P17098 575 aaPredicted RBP16.16■□□□□ 0.18
USP4-201ENST00000265560 ITPKAP23677 461 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 GTF2H2Q13888 395 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 FGL2Q14314 439 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 KRT72Q14CN4 511 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 GTF2H2CQ6P1K8 395 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 PPFIBP2Q8ND30 876 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 RHBDF1Q96CC6 855 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 MTFMTQ96DP5 389 aaKnown RBP16.16■□□□□ 0.18
USP4-201ENST00000265560 NECTIN4Q96NY8 510 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 C19orf43Q9BQ61 176 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 BTBD10Q9BSF8 475 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 NUDT4Q9NZJ9 180 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 LMCD1Q9NZU5 365 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 H0Y858 1186 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 AIM2O14862 343 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 SORBS2O94875 1100 aaKnown RBP16.16■□□□□ 0.18
USP4-201ENST00000265560 HTR6P50406 440 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 ILF2Q12905 390 aaKnown RBP16.16■□□□□ 0.18
USP4-201ENST00000265560 TSTA3Q13630 321 aaPredicted RBP16.16■□□□□ 0.18
USP4-201ENST00000265560 INPP5AQ14642 412 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 CYB5D1Q6P9G0 228 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 ADGRG6Q86SQ4 1221 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 SNX32Q86XE0 403 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 CEP70Q8NHQ1 597 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 RPLP0P6Q8NHW5 317 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 ZNF483Q8TF39 744 aaPredicted RBP16.16■□□□□ 0.18
USP4-201ENST00000265560 ASZ1Q8WWH4 475 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 TUBGCP3Q96CW5 907 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 TRMOQ9BU70 441 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 STN1Q9H668 368 aaKnown RBP16.16■□□□□ 0.18
USP4-201ENST00000265560 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.16■□□□□ 0.18
USP4-201ENST00000265560 OARD1Q9Y530 152 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 ANGPTL3Q9Y5C1 460 aa16.16■□□□□ 0.18
USP4-201ENST00000265560 TRPC5OSA6NMA1 111 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 OR7A17O14581 309 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 SLC31A1O15431 190 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 GPC4O75487 556 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 TM7SF2O76062 418 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 CAPN1P07384 714 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 BDKRB1P46663 353 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 LDLRAP1Q5SW96 308 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 RIPOR1Q6ZS17 1223 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 ZNF547Q8IVP9 402 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 OR4F6Q8NGB9 312 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 TMEM159Q96B96 161 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 GAS2L1Q99501 681 aaPredicted RBP16.15■□□□□ 0.18
USP4-201ENST00000265560 HDAC8Q9BY41 377 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 PTBP2Q9UKA9 531 aaKnown RBP16.15■□□□□ 0.18
USP4-201ENST00000265560 PSMD13Q9UNM6 376 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 ZFR2Q9UPR6 939 aaKnown RBP16.15■□□□□ 0.18
USP4-201ENST00000265560 CFAP20Q9Y6A4 193 aaKnown RBP16.15■□□□□ 0.18
USP4-201ENST00000265560 SLCO1B7G3V0H7 640 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 STX16-NPEPL1H3BU86 382 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 STX16O14662 325 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 GIPC1O14908 333 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 CUL3Q13618 768 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 NFE2L1Q14494 772 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 GPRIN3Q6ZVF9 776 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 NUDT8Q8WV74 236 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 FARSBQ9NSD9 589 aaKnown RBP16.15■□□□□ 0.18
USP4-201ENST00000265560 CCDC167Q9P0B6 97 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 BAIAP2L1Q9UHR4 511 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 CA5BQ9Y2D0 317 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 DMDP11532 3685 aa16.15■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3DA0A087WVF3 549 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3IA0A087WXS9 549 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3EA0A087X179 549 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3KA0A087X1G2 549 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3FA6NER0 549 aaPredicted RBP16.14■□□□□ 0.18
USP4-201ENST00000265560 TBC1D3LB9A6J9 549 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 GSC2O15499 205 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 ATG13O75143 517 aa16.14■□□□□ 0.18
USP4-201ENST00000265560 ATP5HO75947 161 aa16.14■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms