RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 EBNA1BP2Q99848 306 aaKnown RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 MRPS30Q9NP92 439 aaKnown RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 BLOC1S4Q9NUP1 217 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 KCTD5Q9NXV2 234 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 DEC1Q9P2X7 70 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 ITGA2BP08514 1039 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 PAX3P23760 479 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 ACSL1P33121 698 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 GRIK2Q13002 908 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 SIM2Q14190 667 aaPredicted RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 POP5Q969H6 163 aaKnown RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 S100PBPQ96BU1 408 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 WDR77Q9BQA1 342 aaPredicted RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 GLIS2Q9BZE0 524 aaPredicted RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 NMUR1Q9HB89 426 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 ERVK-5Q9HDB9 667 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 POU2F3Q9UKI9 436 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 KHNYNO15037 678 aaKnown RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 MPZL2O60487 215 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 MAPTP10636 758 aaKnown RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 CFL1P23528 166 aaKnown RBP11.24□□□□□ -0.61
PTPN4-201ENST00000263708 CNTN2Q02246 1040 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 MED27Q6P2C8 311 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 XKRXQ6PP77 449 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 FAM47BQ8NA70 645 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 TRPM4Q8TD43 1214 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 GMEB2Q9UKD1 530 aa11.24□□□□□ -0.61
PTPN4-201ENST00000263708 DAPL1A0PJW8 107 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 SAP18O00422 153 aaKnown RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 PCDHGA12O60330 932 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF12P17014 697 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 KHKP50053 298 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CDH12P55289 794 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 TLE2Q04725 743 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 RDH11Q8TC12 318 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 TESMINQ9Y4I5 508 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 TRAF6Q9Y4K3 522 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 NPIPA5E9PKD4 350 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 SCGB2A1O75556 95 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 PRAMEF12O95522 483 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 DNAJA1P31689 397 aaKnown RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 OR12D2P58182 307 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ELF3P78545 371 aaPredicted RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ELP6Q0PNE2 266 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ATAT1Q5SQI0 421 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 SLC29A4Q7RTT9 530 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF554Q86TJ5 538 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 KLK6Q92876 244 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 LPIN3Q9BQK8 851 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CDT1Q9H211 546 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ACSS2Q9NR19 701 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 FBXL3Q9UKT7 428 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 NPIPA1Q9UND3 350 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ADCY10Q96PN6 1610 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CABYRO75952 493 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 RPP14O95059 124 aaKnown RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 FOSL1P15407 271 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ENTPD1P49961 510 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 MAMLD1Q13495 774 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 SCGB3A2Q96PL1 93 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF717Q9BY31 904 aaPredicted RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CDH19Q9H159 772 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 NELFAQ9H3P2 528 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 RNPEPL1Q9HAU8 725 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 PRDM16Q9HAZ2 1276 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 HEBP2Q9Y5Z4 205 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CPED1A4D0V7 1026 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 hCG_2039718K7EN88 272 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 PDYNP01213 254 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 DRD4P21917 467 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ODF4Q2M2E3 257 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 TIFAQ96CG3 184 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF649Q9BS31 505 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 SLC28A3Q9HAS3 691 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CLPXO76031 633 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ANXA4P09525 319 aaPredicted RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 DCDC1P59894 354 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 GTF2H2Q13888 395 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 INAVAQ3KP66 663 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 GTF2H2CQ6P1K8 395 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 SLC9A9Q8IVB4 645 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 TNFRSF25Q93038 417 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CHST7Q9NS84 486 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 MTMR10Q9NXD2 777 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 DKKL1Q9UK85 242 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 FZD1Q9UP38 647 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ERVW-1Q9UQF0 538 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 MAGI3Q5TCQ9 1506 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 NR4A1P22736 598 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ILF3Q12906 894 aaKnown RBP eCLIP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 SLC5A9Q2M3M2 681 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 DGAT2Q96PD7 388 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 A0A1W2PQH9 124 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 C9IYK1 514 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 C1RP00736 705 aa11.23□□□□□ -0.61
PTPN4-201ENST00000263708 EFNA1P20827 205 aaPredicted RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CDKN1CP49918 316 aaPredicted RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF143P52747 638 aaPredicted RBP11.23□□□□□ -0.61
PTPN4-201ENST00000263708 CDH11P55287 796 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms