RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 SLC13A3Q8WWT9 602 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 EMID1Q96A84 441 aaPredicted RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 C5orf34Q96MH7 638 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 CCSER2Q9H7U1 834 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 SMPD3Q9NY59 655 aaPredicted RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 HAT1O14929 419 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 ONECUT3O60422 494 aaPredicted RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 MATN4O95460 622 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 SAGP10523 405 aaPredicted RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 CD247P20963 164 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 ALAS2P22557 587 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 HM13Q8TCT9 377 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 EFCAB11Q9BUY7 163 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 NOL6Q9H6R4 1146 aaKnown RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 WDR26Q9H7D7 661 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 GALNT8Q9NY28 637 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 UBE2QL1A1L167 161 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 BCKDKO14874 412 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 B3GALT2O43825 422 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 CCL5P13501 91 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 RANBP3LQ86VV4 465 aaPredicted RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 SIAH1Q8IUQ4 282 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 ZBED6CLQ96FA7 236 aaPredicted RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 CNOT6Q9ULM6 557 aaKnown RBP18.68■□□□□ 0.58
PTPRE-201ENST00000254667 ENPP3O14638 875 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 THRBP10828 461 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 AP1S2P56377 157 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 RHAGQ02094 409 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 SLC10A7Q0GE19 358 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 RAB30Q15771 203 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 SLC35G1Q2M3R5 365 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 SLC9A4Q6AI14 798 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 PAOXQ6QHF9 649 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 TMC5Q6UXY8 1006 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 CYP2U1Q7Z449 544 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 HID1Q8IV36 788 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 OVCA2Q8WZ82 227 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 CDKN2AIPNLQ96HQ2 116 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 B3GALT6Q96L58 329 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 TRIM8Q9BZR9 551 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 USP29Q9HBJ7 922 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 PLGRKTQ9HBL7 147 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 ACSS2Q9NR19 701 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 GKN1Q9NS71 199 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 SH3GLB1Q9Y371 365 aa18.68■□□□□ 0.58
PTPRE-201ENST00000254667 FAM234BA2RU67 622 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 XKRYO14609 159 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 PPEF2O14830 753 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 FFAR2O15552 330 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 UBXN7O94888 489 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 HAPLN1P10915 354 aaPredicted RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 GPR107Q5VW38 600 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 OR13C4Q8NGS5 318 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 PLEKHG4BQ96PX9 1271 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 FBXW2Q9UKT8 454 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 DMTF1Q9Y222 760 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 ZNF30P17039 623 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 MSX2P35548 267 aaPredicted RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 AVPR1BP47901 424 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 SLC34A3Q8N130 599 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 BCAS3Q9H6U6 928 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 MRPS30Q9NP92 439 aaKnown RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 RAPGEFL1Q9UHV5 662 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 MRPS7Q9Y2R9 242 aaKnown RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 PGRMC2O15173 223 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 SLC25A11Q02978 314 aaKnown RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 COL1A1P02452 1464 aaPredicted RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 PDPK1O15530 556 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 TMCC2O75069 709 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 CBSLP0DN79 551 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 ALDH4A1P30038 563 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 CCND3P30281 292 aaPredicted RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 CBSP35520 551 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 OMPP47874 163 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 ERVK-8P63133 956 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 JAG1P78504 1218 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 RBM44Q6ZP01 1051 aaKnown RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 CIB1Q99828 191 aa18.67■□□□□ 0.58
PTPRE-201ENST00000254667 THUMPD1Q9NXG2 353 aaKnown RBP18.67■□□□□ 0.58
PTPRE-201ENST00000254667 KHKP50053 298 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 LSM3P62310 102 aaKnown RBP18.66■□□□□ 0.58
PTPRE-201ENST00000254667 KCNJ11Q14654 390 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 SNAPC1Q16533 368 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 SIRPB2Q5JXA9 342 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 FAM129CQ86XR2 697 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 KBTBD2Q8IY47 623 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 RIT1Q92963 219 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 IL1RAPQ9NPH3 570 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 OSER1Q9NX31 292 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 SQORQ9Y6N5 450 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 ZNF487B1APH4 448 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 SERPINA1P01009 418 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 GALNT2Q10471 571 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 LPCAT4Q643R3 524 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 PIGXQ8TBF5 258 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 OXSMQ9NWU1 459 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 EDDM13A0A1B0GTR0 161 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 C9IYK1 514 aa18.66■□□□□ 0.58
PTPRE-201ENST00000254667 LDOC1O95751 146 aaPredicted RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms