RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 H3BMQ9 156 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 XYLBO75191 536 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 S100BP04271 92 aaPredicted RBP20.95■□□□□ 0.94
TRIM28-201ENST00000253024 CR2P20023 1033 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 CLCN7P51798 805 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 CASP9P55211 416 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 BFSP2Q13515 415 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 TBC1D25Q3MII6 688 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 INTS11Q5TA45 600 aaKnown RBP20.95■□□□□ 0.94
TRIM28-201ENST00000253024 TXNDC8Q6A555 127 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 CXorf57Q6NSI4 855 aaKnown RBP20.95■□□□□ 0.94
TRIM28-201ENST00000253024 SBSNQ6UWP8 590 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 GPR180Q86V85 440 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 ZFAND4Q86XD8 727 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 FRS2Q8WU20 508 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 ULK4Q96C45 1275 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 COG8Q96MW5 612 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 HPS4Q9NQG7 708 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 VCANP13611 3396 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 LSM1O15116 133 aaKnown RBP20.95■□□□□ 0.94
TRIM28-201ENST00000253024 PRKD3O94806 890 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 EOMESO95936 686 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 HNRNPCP07910 306 aaKnown RBP eCLIP20.95■□□□□ 0.94
TRIM28-201ENST00000253024 FSHRP23945 695 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 CCSAPQ6IQ19 270 aaPredicted RBP20.95■□□□□ 0.94
TRIM28-201ENST00000253024 ANKS3Q6ZW76 656 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 GALNT7Q86SF2 657 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 RNF180Q86T96 592 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 SNX29P2Q8IUI4 249 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 BEGAINQ9BUH8 593 aa20.95■□□□□ 0.94
TRIM28-201ENST00000253024 SMG9Q9H0W8 520 aaKnown RBP20.95■□□□□ 0.94
TRIM28-201ENST00000253024 MBD1Q9UIS9 605 aaPredicted RBP20.95■□□□□ 0.94
TRIM28-201ENST00000253024 FAM234BA2RU67 622 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 LOC730098B7Z3J9 87 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 PRMT5O14744 637 aaPredicted RBP20.94■□□□□ 0.94
TRIM28-201ENST00000253024 CST1P01037 141 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 GPIP06744 558 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 FAM189BP81408 668 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 CDH18Q13634 790 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 ATP1A4Q13733 1029 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 SPIDRQ14159 915 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 MYBPC3Q14896 1274 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 PGS1Q32NB8 556 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 ARL14EPQ8N8R7 260 aaPredicted RBP20.94■□□□□ 0.94
TRIM28-201ENST00000253024 OR2T12Q8NG77 320 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 TOR3AQ9H497 397 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 PKD2L2Q9NZM6 624 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 ZNF490Q9ULM2 529 aaPredicted RBP20.94■□□□□ 0.94
TRIM28-201ENST00000253024 TOR1BO14657 336 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 SYN3O14994 580 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 HS6ST1O60243 411 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 GMNNO75496 209 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 GALTP07902 379 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 CHRNB3Q05901 458 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 TRAF7Q6Q0C0 670 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 DRAXINQ8NBI3 349 aaPredicted RBP20.94■□□□□ 0.94
TRIM28-201ENST00000253024 EGLN2Q96KS0 407 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 TMCO1Q9UM00 188 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 ANKRD36A6QL64 1941 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 TAPBPO15533 448 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 PENKP01210 267 aaPredicted RBP20.94■□□□□ 0.94
TRIM28-201ENST00000253024 F11P03951 625 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 MAGEA11P43364 429 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 ZXDBP98169 803 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 HSPA14Q0VDF9 509 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 DDX39BQ13838 428 aaKnown RBP20.94■□□□□ 0.94
TRIM28-201ENST00000253024 MAPKAPK3Q16644 382 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 TTC30BQ8N4P2 665 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 STON2Q8WXE9 905 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 PRDM8Q9NQV8 689 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 FNIP2Q9P278 1114 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 CRLS1Q9UJA2 301 aa20.94■□□□□ 0.94
TRIM28-201ENST00000253024 FNDC1Q4ZHG4 1894 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-201ENST00000253024 PRR35P0CG20 571 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 MAP4P27816 1152 aaKnown RBP20.93■□□□□ 0.94
TRIM28-201ENST00000253024 ARSFP54793 590 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 POM121L1PQ3SYA9 428 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 ZBED5Q49AG3 693 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 SUSD1Q6UWL2 747 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 TBC1D21Q8IYX1 336 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 MFSD2AQ8NA29 543 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 HM13Q8TCT9 377 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 DUS3LQ96G46 650 aaKnown RBP20.93■□□□□ 0.94
TRIM28-201ENST00000253024 CASD1Q96PB1 797 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 BDH2Q9BUT1 245 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 EBPLQ9BY08 206 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 MRGBPQ9NV56 204 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 VPS51Q9UID3 782 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 FAM92AA1XBS5 289 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 OR6C75A6NL08 312 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 MITFO75030 526 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-201ENST00000253024 CLDN11O75508 207 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 STK19P49842 368 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-201ENST00000253024 CCR3P51677 355 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 EMX2Q04743 252 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 ADRM1Q16186 407 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 DTNBP1Q96EV8 351 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 DPY30Q9C005 99 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 LMCD1Q9NZU5 365 aa20.93■□□□□ 0.94
TRIM28-201ENST00000253024 H0Y858 1186 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms