RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 BMP4P12644 408 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 PBX3P40426 434 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 PWP1Q13610 501 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 RAPSNQ13702 412 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 NR6A1Q15406 480 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 AP5B1Q2VPB7 878 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 TTC23Q5W5X9 447 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 ANKRD13BQ86YJ7 626 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 GPSM1Q86YR5 675 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 CHPFQ8IZ52 775 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 MFSD4AQ8N468 514 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 KRTCAP2Q8N6L1 136 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 OR4F6Q8NGB9 312 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 GTF2H4Q92759 462 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 SLC47A1Q96FL8 570 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 RPRD1AQ96P16 312 aaPredicted RBP12.2□□□□□ -0.46
NUP88-201ENST00000225696 FEM1AQ9BSK4 669 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 TRIM62Q9BVG3 475 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 YIPF2Q9BWQ6 316 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 BTBD2Q9BX70 525 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 PRDM8Q9NQV8 689 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 NLE1Q9NVX2 485 aaPredicted RBP12.2□□□□□ -0.46
NUP88-201ENST00000225696 SEPT3Q9UH03 358 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 RBMX2Q9Y388 322 aaKnown RBP12.2□□□□□ -0.46
NUP88-201ENST00000225696 ANKRD36A6QL64 1941 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 NUP214P35658 2090 aaPredicted RBP12.2□□□□□ -0.46
NUP88-201ENST00000225696 SYCE1LA8MT33 242 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 A8MU76 341 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 M0QZQ0 153 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 ARNTLO00327 626 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 KPNA4O00629 521 aaPredicted RBP12.2□□□□□ -0.46
NUP88-201ENST00000225696 GNGT2O14610 69 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 TBC1D4O60343 1298 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 ZNF865P0CJ78 1059 aaPredicted RBP12.2□□□□□ -0.46
NUP88-201ENST00000225696 CYP4B1P13584 511 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 HLA-DPA1P20036 260 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 FMO3P31513 532 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 DCTP40126 519 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 TMED10P49755 219 aaKnown RBP12.2□□□□□ -0.46
NUP88-201ENST00000225696 MRPS6P82932 125 aaKnown RBP12.2□□□□□ -0.46
NUP88-201ENST00000225696 IL10RBQ08334 325 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 ZNF235Q14590 738 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 PAGE2BQ5JRK9 111 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 TMEM53Q6P2H8 277 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 BRI3BPQ8WY22 251 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 FATE1Q969F0 183 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 SLC10A4Q96EP9 437 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 BTN2A3PQ96KV6 586 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 GORASP2Q9H8Y8 452 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 KLQ9UEF7 1012 aa12.2□□□□□ -0.46
NUP88-201ENST00000225696 GSTA4O15217 222 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 PRAMEF11O60813 436 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 PARNO95453 639 aaKnown RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 HPRP00739 348 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 NPPAP01160 153 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 PRLP01236 227 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 FTH1P02794 183 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 GSTT2P0CG29 244 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 GSTT2BP0CG30 244 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 BMP1P13497 986 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 HOXB8P17481 243 aaPredicted RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 ITIH1P19827 911 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 TGM1P22735 817 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 NCS1P62166 190 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 HMGCS1Q01581 520 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 CDK5R2Q13319 367 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 DGCR6Q14129 220 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 ZNF846Q147U1 533 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 SMN1Q16637 294 aaKnown RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 FAM174BQ3ZCQ3 159 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 CATSPEREQ5SY80 951 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 ZNF691Q5VV52 312 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 DET1Q7L5Y6 550 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 PLEKHH3Q7Z736 793 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 DCP2Q8IU60 420 aaKnown RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 ZNF555Q8NEP9 628 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 CLHC1Q8NHS4 586 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 RPL3LQ92901 407 aaKnown RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 HPS1Q92902 700 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 RMDN1Q96DB5 314 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 MAGED4Q96JG8 741 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 ZNF382Q96SR6 550 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 MYOCQ99972 504 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 FKBPLQ9UIM3 349 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 GIT1Q9Y2X7 761 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 NAALAD2Q9Y3Q0 740 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 FAM32AQ9Y421 112 aaKnown RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 CCL27Q9Y4X3 112 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 CCL15-CCL14A0A0B4J2E2 113 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 C16orf96A6NNT2 1141 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 ZNF99A8MXY4 864 aaPredicted RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 PRMT5O14744 637 aaPredicted RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 FFAR3O14843 346 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 GPR42O15529 346 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 NADKO95544 446 aaPredicted RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 SLC2A4P14672 509 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 EPHA2P29317 976 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 GDF5P43026 501 aa12.19□□□□□ -0.46
NUP88-201ENST00000225696 RPL38P63173 70 aaKnown RBP12.19□□□□□ -0.46
NUP88-201ENST00000225696 TSPY1Q01534 308 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms