RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 IKZF3Q9UKT9 509 aa12.99□□□□□ -0.33
MSH6-214ENST00000616033 MOXD2PA6NHM9 499 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 SEMA3DO95025 777 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 CHRNA1P02708 482 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 EFNA1P20827 205 aaPredicted RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 EPHA2P29317 976 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 ALDH7A1P49419 539 aaKnown RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 GRIK4Q16099 956 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 BCL2A1Q16548 175 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 LRRC8DQ7L1W4 858 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 SCN4BQ8IWT1 228 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 TMEM199Q8N511 208 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 OR13J1Q8NGT2 312 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 FAR1Q8WVX9 515 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 ZNF560Q96MR9 790 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 SP110Q9HB58 689 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 BPIFA1Q9NP55 256 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 VAPAQ9P0L0 249 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 ACTL7AQ9Y615 435 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 COL2A1P02458 1487 aaPredicted RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 IQCF5A8MTL0 148 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 GPR39O43194 453 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 MAFKO60675 156 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 S1PR4O95977 384 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 B3GALT4O96024 378 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 AZGP1P25311 298 aaKnown RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 MASP1P48740 699 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 CDKN1CP49918 316 aaPredicted RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 DGKEP52429 567 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 RPL38P63173 70 aaKnown RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 ILF2Q12905 390 aaKnown RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 PTPRRQ15256 657 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 AGAP7PQ5VUJ5 663 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 DNAJB3Q8WWF6 145 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 DACT3Q96B18 629 aaPredicted RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 LGALS12Q96DT0 336 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 UBXN10Q96LJ8 280 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 MBOAT4Q96T53 435 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 TREX1Q9NSU2 369 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 FBXO10Q9UK96 956 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 ADAMTS5Q9UNA0 930 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 H0YAE9 185 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 UPK1AO00322 258 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 RGS5O15539 181 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 ALOX5P09917 674 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 PGFP49763 221 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 ST13P50502 369 aaKnown RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 NUDT6P53370 316 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 SEMA3AQ14563 771 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 SNX17Q15036 470 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 CRY1Q16526 586 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 RBM48Q5RL73 367 aaKnown RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 STEAP3Q658P3 488 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 NEK5Q6P3R8 708 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 ZNF549Q6P9A3 640 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 OR8H2Q8N162 312 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 LPPQ93052 612 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 FCRL5Q96RD9 977 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 TDRD1Q9BXT4 1180 aaKnown RBP12.98□□□□□ -0.33
MSH6-214ENST00000616033 DSN1Q9H410 356 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 IKZF5Q9H5V7 419 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 SCUBE2Q9NQ36 999 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 C12orf4Q9NQ89 552 aa12.98□□□□□ -0.33
MSH6-214ENST00000616033 MIA3Q5JRA6 1907 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 CCDC162PA2VCL2 907 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 TLR5O60602 858 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 ECI2O75521 394 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 HMGCS1Q01581 520 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 LCP2Q13094 533 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 RAP1GAP2Q684P5 730 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 Q6ZPB1 254 aaPredicted RBP12.97□□□□□ -0.33
MSH6-214ENST00000616033 HID1Q8IV36 788 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 COLGALT2Q8IYK4 626 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 ELMOD2Q8IZ81 293 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 EID3Q8N140 333 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 GIPC2Q8TF65 315 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 S100ZQ8WXG8 99 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 FERD3LQ96RJ6 166 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 GPR21Q99679 349 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 TRMOQ9BU70 441 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 DCSTAMPQ9H295 470 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 ADPRHL2Q9NX46 363 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 EFCAB9A8MZ26 197 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 CD3EAPO15446 510 aaKnown RBP12.97□□□□□ -0.33
MSH6-214ENST00000616033 MTHFD2P13995 350 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 TRAF3Q13114 568 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 TUBA3CQ13748 450 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 FAM174BQ3ZCQ3 159 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 C6orf136Q5SQH8 315 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 NOTUMQ6P988 496 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 LRRC52Q8N7C0 313 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 EFHBQ8N7U6 833 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 ARRDC4Q8NCT1 418 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 PROKR1Q8TCW9 393 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 PROX1Q92786 737 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 RMDN1Q96DB5 314 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 SENP8Q96LD8 212 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 CGREF1Q99674 301 aa12.97□□□□□ -0.33
MSH6-214ENST00000616033 KIF17Q9P2E2 1029 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms