RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RIT1Q92963 219 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 SGTBQ96EQ0 304 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 KLHL15Q96M94 604 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 BCL2L14Q9BZR8 327 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 WDR55Q9H6Y2 383 aaPredicted RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 CYP3A43Q9HB55 503 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 RC3H2Q9HBD1 1191 aaKnown RBP10.1□□□□□ -0.79
VPS39-214ENST00000614932 CD300AQ9UGN4 299 aa10.1□□□□□ -0.79
VPS39-214ENST00000614932 DHRS12A0PJE2 317 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ASB14A6NK59 587 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 STX7O15400 261 aaKnown RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 GATCO43716 136 aaKnown RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 IL1R2P27930 398 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 SOX11P35716 441 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ERVFC1P60507 584 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ERVK-8P63133 956 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 PIGFQ07326 219 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 IKZF1Q13422 519 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 KCNC3Q14003 757 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 INPP5AQ14642 412 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 DENND5AQ6IQ26 1287 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ARHGAP36Q6ZRI8 547 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 COMMD7Q86VX2 200 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ZSWIM9Q86XI8 627 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ASB12Q8WXK4 309 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 LGALS12Q96DT0 336 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 YIPF6Q96EC8 236 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 NEDD4LQ96PU5 975 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 NODALQ96S42 347 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 C16orf70Q9BSU1 422 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 GTPBP2Q9BX10 602 aaKnown RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 C6orf62Q9GZU0 229 aaPredicted RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 TMEM245Q9H330 911 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 FAM49BQ9NUQ9 324 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 CD274Q9NZQ7 290 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 KLK14Q9P0G3 267 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 CPA4Q9UI42 421 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 MKLN1Q9UL63 735 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 USP22Q9UPT9 525 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 DTX4Q9Y2E6 619 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 RPH3AQ9Y2J0 694 aaPredicted RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 METTL15A6NJ78 407 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 HACD1B0YJ81 288 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 BTN3A3O00478 584 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 NEMP1O14524 444 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 TPST1O60507 370 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 C1QBP02746 253 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 FTH1P02794 183 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 FCGR1AP12314 374 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 SRCP12931 536 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 IL7RP16871 459 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 AKAP5P24588 427 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 CD68P34810 354 aaPredicted RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 RPL22P35268 128 aaKnown RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 IMPG1Q17R60 797 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ZNF792Q3KQV3 632 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 SETMARQ53H47 684 aaPredicted RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 SAMD4BQ5PRF9 694 aaKnown RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 TIGD3Q6B0B8 471 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 TIFABQ6ZNK6 161 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ADGRG3Q86Y34 549 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 TXNDC5Q8NBS9 432 aaKnown RBP10.09□□□□□ -0.79
VPS39-214ENST00000614932 ZMIZ2Q8NF64 920 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 SETD6Q8TBK2 473 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 RORBQ92753 470 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 TMCO6Q96DC7 493 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 KIF12Q96FN5 646 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 HPDLQ96IR7 371 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 SLITRK1Q96PX8 696 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 OSMRQ99650 979 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 SPATA9Q9BWV2 254 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 SPAG4Q9NPE6 437 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 CNTN6Q9UQ52 1028 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 TNFSF13BQ9Y275 285 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 KLHL20Q9Y2M5 609 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 ACOT9Q9Y305 439 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 HSPB11Q9Y547 144 aa10.09□□□□□ -0.79
VPS39-214ENST00000614932 HMX2A2RU54 273 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 MICAL2O94851 1124 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 NPPAP01160 153 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 PRKCHP24723 683 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 SLC15A1P46059 708 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 CAPZA2P47755 286 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 SERPINB9P50453 376 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 RPP38P78345 283 aaKnown RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 GRIK4Q16099 956 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 C6orf141Q5SZD1 244 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 TAF2Q6P1X5 1199 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 TXNDC11Q6PKC3 985 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 GPR142Q7Z601 462 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 OR8H3Q8N146 312 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 ARFGAP1Q8N6T3 406 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 OR6J1Q8NGC5 347 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 LPPQ93052 612 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 PTERQ96BW5 349 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 SPNS1Q9H2V7 528 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 TRMT13Q9NUP7 481 aaKnown RBP10.08□□□□□ -0.8
VPS39-214ENST00000614932 TMEM39AQ9NV64 488 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 HPF1Q9NWY4 346 aa10.08□□□□□ -0.8
VPS39-214ENST00000614932 DPP3Q9NY33 737 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms