RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SLC6A19Q695T7 634 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 IGFL3Q6UXB1 125 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 TMEM135Q86UB9 458 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 HOOK3Q86VS8 718 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.14□□□□□ -1.43
CUX1-220ENST00000607092 ENDOVQ8N8Q3 282 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 GPR26Q8NDV2 337 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 DDHD1Q8NEL9 900 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 CTNNBL1Q8WYA6 563 aaPredicted RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 N4BP2L2Q92802 583 aaPredicted RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.14□□□□□ -1.432e-6■■■■■ 30.1
CUX1-220ENST00000607092 FAF2Q96CS3 445 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 ZNF501Q96CX3 271 aaPredicted RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 IMP4Q96G21 291 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 TRIB3Q96RU7 358 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 MAP3K3Q99759 626 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 BPIFA3Q9BQP9 254 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 ILKAPQ9H0C8 392 aaPredicted RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 CHST8Q9H2A9 424 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 ACTR5Q9H9F9 607 aaPredicted RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 VPS37BQ9H9H4 285 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 SMOXQ9NWM0 555 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 SLC23A2Q9UGH3 650 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 GPN3Q9UHW5 284 aaPredicted RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 SHOC2Q9UQ13 582 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 PKP3Q9Y446 797 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 COPG1Q9Y678 874 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 PDZD2O15018 2839 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 SPG11Q96JI7 2443 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 MED13Q9UHV7 2174 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 A0A0A6YYK5 440 aaPredicted RBP6.13□□□□□ -1.43
CUX1-220ENST00000607092 GLYATL1P3A0A0U1RQE8 302 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 A0A1W2PQJ5 194 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 A1L4Q6 167 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ANKUB1A6NFN9 424 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 MGAT4DA6NG13 374 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 BHMG1C9JSJ3 638 aaPredicted RBP6.13□□□□□ -1.43
CUX1-220ENST00000607092 E7EQ34 232 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 KCNK1O00180 336 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 IFRD1O00458 451 aaPredicted RBP6.13□□□□□ -1.43
CUX1-220ENST00000607092 APOL1O14791 398 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 TIAF1O95411 115 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 CBX6O95503 412 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 MBD3O95983 291 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 SLC4A1P02730 911 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 PDGFAP04085 211 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 SERPING1P05155 500 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 GSTM1P09488 218 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 H2AFZP0C0S5 128 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 BPIP17213 487 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 MSH3P20585 1137 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ITGAXP20702 1163 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 CDH3P22223 829 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ITGA3P26006 1051 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 TNFRSF8P28908 595 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 AKT1P31749 480 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 DCTP40126 519 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 FOLR3P41439 243 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 PREPP48147 710 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 NR2C2P49116 596 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ITGA1P56199 1179 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 SOX8P57073 446 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 GSTM4Q03013 218 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 AP1B1Q10567 949 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 IL10RAQ13651 578 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 GALNT3Q14435 633 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 SSPNQ14714 243 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 MYBPC3Q14896 1274 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 NCF4Q15080 339 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 KYNUQ16719 465 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ATP13A5Q4VNC0 1218 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 METRNLQ641Q3 311 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 CPZQ66K79 652 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 FCRL6Q6DN72 434 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ALKBH5Q6P6C2 394 aaKnown RBP6.13□□□□□ -1.43
CUX1-220ENST00000607092 FAM199XQ6PEV8 388 aaPredicted RBP6.13□□□□□ -1.43
CUX1-220ENST00000607092 SARM1Q6SZW1 724 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 H2AFVQ71UI9 128 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 C11orf96Q7Z7L8 435 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 RETREG3Q86VR2 466 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ZNF547Q8IVP9 402 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 SYTL1Q8IYJ3 562 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 DSELQ8IZU8 1212 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ST6GALNAC3Q8NDV1 305 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ACVR1CQ8NER5 493 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 FDCSPQ8NFU4 85 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 ADAMTS17Q8TE56 1095 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 DCUN1D1Q96GG9 259 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 PPP1R2P1Q96PQ5 205 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 RNF157Q96PX1 679 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 UCN2Q96RP3 112 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 VAT1Q99536 393 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 C19orf43Q9BQ61 176 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 AP1M1Q9BXS5 423 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 THAP2Q9H0W7 228 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 KIR3DX1Q9H7L2 352 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 DTLQ9NZJ0 730 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 CTTNBP2NLQ9P2B4 639 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 FAM153AQ9UHL3 310 aa6.13□□□□□ -1.43
CUX1-220ENST00000607092 SLC24A2Q9UI40 661 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms