RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 GPR150Q8NGU9 434 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 NCSTNQ92542 709 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 PRR11Q96HE9 360 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-215ENST00000601150 CCDC74BQ96LY2 380 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 RMDN2Q96LZ7 410 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 KRT12Q99456 494 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 AKAP7Q9P0M2 348 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-215ENST00000601150 HEBP2Q9Y5Z4 205 aa16.48■□□□□ 0.23
TRIM28-215ENST00000601150 CFAP20Q9Y6A4 193 aaKnown RBP16.48■□□□□ 0.23
TRIM28-215ENST00000601150 PMS2P1A4D2B8 440 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 TAF4O00268 1085 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 LIN7AO14910 233 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-215ENST00000601150 PLD2O14939 933 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 HGSO14964 777 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-215ENST00000601150 NDUFS3O75489 264 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 UBXN7O94888 489 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 THRAP10827 490 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 TYRP1P17643 537 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 AMD1P17707 334 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 IVDP26440 423 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 C16orf72Q14CZ0 275 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 TBC1D25Q3MII6 688 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 ANKRD20A4Q4UJ75 823 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 SDCCAG8Q86SQ7 713 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-215ENST00000601150 PLXDC1Q8IUK5 500 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 SPDYE1Q8NFV5 336 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-215ENST00000601150 ZFPM2Q8WW38 1151 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 ELMO1Q92556 727 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 ZNF669Q96BR6 464 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-215ENST00000601150 SIGLEC10Q96LC7 697 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 ZNF578Q96N58 590 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-215ENST00000601150 SLC46A1Q96NT5 459 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 FCRL3Q96P31 734 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-215ENST00000601150 CMKLR1Q99788 373 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 TRIM51Q9BSJ1 452 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 TSSK1BQ9BXA7 367 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 OR52A5Q9H2C5 316 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 ASCL3Q9NQ33 180 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 OGFRQ9NZT2 677 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 TMEM9Q9P0T7 183 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 PDP2Q9P2J9 529 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 LOXL2Q9Y4K0 774 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 MAD1L1Q9Y6D9 718 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 RPS6KL1Q9Y6S9 549 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 COLEC10Q9Y6Z7 277 aa16.47■□□□□ 0.23
TRIM28-215ENST00000601150 IFRD1O00458 451 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-215ENST00000601150 PRMT5O14744 637 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-215ENST00000601150 PFDN6O15212 129 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 TNFSF15O95150 251 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 JMJD7P0C870 316 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 MPSTP25325 297 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 NDUFS1P28331 727 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 PREPP48147 710 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 ARCN1P48444 511 aaKnown RBP16.46■□□□□ 0.23
TRIM28-215ENST00000601150 CD151P48509 253 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 ERVPABLB-1P60509 514 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 KRT33BQ14525 404 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 MORF4L2Q15014 288 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 SYTL3Q4VX76 610 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 DUS1LQ6P1R4 473 aaKnown RBP16.46■□□□□ 0.23
TRIM28-215ENST00000601150 TMEM135Q86UB9 458 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 LRRC6Q86X45 466 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 AGGF1Q8N302 714 aaeCLIP16.46■□□□□ 0.23
TRIM28-215ENST00000601150 RCBTB1Q8NDN9 531 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 SPATA4Q8NEY3 305 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 C16orf45Q96MC5 204 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-215ENST00000601150 TCF12Q99081 682 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 TRIM56Q9BRZ2 755 aaKnown RBP16.46■□□□□ 0.23
TRIM28-215ENST00000601150 THSD1Q9NS62 852 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 RAXQ9Y2V3 346 aa16.46■□□□□ 0.23
TRIM28-215ENST00000601150 EPG5Q9HCE0 2579 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 APC2O95996 2303 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 ACACAQ13085 2346 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 SRRM3A6NNA2 597 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 GOLGA8KD6RF30 607 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 GOLGA8TH3BQL2 631 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 SMAPO00193 183 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 AGRPO00253 132 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 TLX3O43711 291 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 USP1O94782 785 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 ITGA2BP08514 1039 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 HGFP14210 728 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 OGNP20774 298 aaKnown RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 PDHA2P29803 388 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 BOP1Q14137 746 aaKnown RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 PLCL1Q15111 1095 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 TYSND1Q2T9J0 566 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 DNAJC21Q5F1R6 531 aaKnown RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 SNAP47Q5SQN1 464 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 RNF187Q5TA31 235 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 PTRHD1Q6GMV3 140 aaKnown RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 NEPROQ6NW34 567 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 KLHL35Q6PF15 583 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 PDZD3Q86UT5 571 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 SNIP1Q8TAD8 396 aaKnown RBP16.45■□□□□ 0.22
TRIM28-215ENST00000601150 FGF11Q92914 225 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 STAMBPL1Q96FJ0 436 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 SNF8Q96H20 258 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 CARD6Q9BX69 1037 aa16.45■□□□□ 0.22
TRIM28-215ENST00000601150 P2RY12Q9H244 342 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms