RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PTCD2Q8WV60 388 aaKnown RBP18.09■□□□□ 0.49
UPF1-210ENST00000600689 UBE2FQ969M7 185 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 SLC47A1Q96FL8 570 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 AKIP1Q9NQ31 210 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 HACD3Q9P035 362 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 KIAA1522Q9P206 1035 aaPredicted RBP18.09■□□□□ 0.49
UPF1-210ENST00000600689 ST3GAL5Q9UNP4 418 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 EMX2Q04743 252 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 GNASQ5JWF2 1037 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 RBM48Q5RL73 367 aaKnown RBP18.09■□□□□ 0.49
UPF1-210ENST00000600689 POC5Q8NA72 575 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 HDAC2Q92769 488 aaKnown RBP18.09■□□□□ 0.49
UPF1-210ENST00000600689 CGREF1Q99674 301 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 BARD1Q99728 777 aaKnown RBP18.09■□□□□ 0.49
UPF1-210ENST00000600689 SEMA3CQ99985 751 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 WDR12Q9GZL7 423 aaKnown RBP18.09■□□□□ 0.49
UPF1-210ENST00000600689 C6orf62Q9GZU0 229 aaPredicted RBP18.09■□□□□ 0.49
UPF1-210ENST00000600689 NEU3Q9UQ49 428 aa18.09■□□□□ 0.49
UPF1-210ENST00000600689 TMA7Q9Y2S6 64 aaKnown RBP18.09■□□□□ 0.49
UPF1-210ENST00000600689 IQCF5A8MTL0 148 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 ANGPTL1O95841 491 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 UGT2B4P06133 528 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 OR4Q2P0C623 313 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 FDXRP22570 491 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 HTR1EP28566 365 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 TUBA3CQ13748 450 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 ALFQ53S48 1182 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 PROSER1Q86XN7 944 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 METTL6Q8TCB7 284 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 MUL1Q969V5 352 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 SMARCD1Q96GM5 515 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 SLC25A51Q9H1U9 297 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 VPS4AQ9UN37 437 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 B3GNT3Q9Y2A9 372 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 HS3ST4Q9Y661 456 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 PMF1-BGLAPU3KQ54 211 aa18.08■□□□□ 0.49
UPF1-210ENST00000600689 TANC1Q9C0D5 1861 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 HHLA1C9JL84 531 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 GTF2E2P29084 291 aaKnown RBP18.08■□□□□ 0.48
UPF1-210ENST00000600689 IRAK1BP1Q5VVH5 260 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 PLEKHG7Q6ZR37 379 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 FRA10AC1Q70Z53 315 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 PLD3Q8IV08 490 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 STAG3L4Q8TBR4 150 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 GPR152Q8TDT2 470 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 ITPKCQ96DU7 683 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 AMBNQ9NP70 447 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 MAGEL2Q9UJ55 1249 aa18.08■□□□□ 0.48
UPF1-210ENST00000600689 SLC7A4O43246 635 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 LDB2O43679 373 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 PRSS23O95084 383 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 S100BP04271 92 aaPredicted RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 NPTX1Q15818 432 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 SIDT2Q8NBJ9 832 aaKnown RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 PAPD5Q8NDF8 572 aaKnown RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 MFSD1Q9H3U5 465 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 BPIFA1Q9NP55 256 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 SCHIP1Q9P0W5 487 aaPredicted RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP18.07■□□□□ 0.48
UPF1-210ENST00000600689 CAB39Q9Y376 341 aaPredicted RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 TNPO2O14787 897 aaKnown RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 IRAK2O43187 625 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 NIPSNAP2O75323 286 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 GUCA1CO95843 209 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 CAPN1P07384 714 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 ENO2P09104 434 aaPredicted RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 TGM1P22735 817 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 GDF6Q6KF10 455 aaPredicted RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 SLC22A15Q8IZD6 547 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 FAR1Q8WVX9 515 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 SLX1AQ9BQ83 275 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 CATSPERZQ9NTU4 200 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.07■□□□□ 0.48
UPF1-210ENST00000600689 ZNF639Q9UID6 485 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 OR1I1O60431 355 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 SLC2A4P14672 509 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 CRY1Q16526 586 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 DGUOKQ16854 277 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 RFTN2Q52LD8 501 aaPredicted RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 MRNIPQ6NTE8 343 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 C17orf99Q6UX52 265 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 MIB1Q86YT6 1006 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 RASAL3Q86YV0 1011 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 SYTL1Q8IYJ3 562 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 LEMD2Q8NC56 503 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 MRM3Q9HC36 420 aaKnown RBP18.07■□□□□ 0.48
UPF1-210ENST00000600689 FAM105AQ9NUU6 356 aa18.07■□□□□ 0.48
UPF1-210ENST00000600689 ZNF236Q9UL36 1845 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 PRMT5O14744 637 aaPredicted RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 GABRDO14764 452 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 BCKDKO14874 412 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 B3GALT4O96024 378 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 GRIK1P39086 918 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 SCNN1GP51170 649 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 RPL38P63173 70 aaKnown RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 FOXM1Q08050 763 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 PTPRNQ16849 979 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 TIGD7Q6NT04 549 aaPredicted RBP18.06■□□□□ 0.48
UPF1-210ENST00000600689 DLEU7Q6UYE1 221 aa18.06■□□□□ 0.48
UPF1-210ENST00000600689 Q6ZSR9 355 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms