RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ZFATQ9P243 1243 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 ZNF624Q9P2J8 865 aaPredicted RBP18.95■□□□□ 0.62
UPF1-209ENST00000600310 SLC17A6Q9P2U8 582 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 COMMD10Q9Y6G5 202 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 LAMA1P25391 3075 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 MED19A0JLT2 244 aaPredicted RBP18.94■□□□□ 0.62
UPF1-209ENST00000600310 NIPSNAP2O75323 286 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 DKK1O94907 266 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 C1QAP02745 245 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 GP1BAP07359 652 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 PNLIPP16233 465 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 XRCC1P18887 633 aaPredicted RBP18.94■□□□□ 0.62
UPF1-209ENST00000600310 TNFRSF8P28908 595 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 SLC19A1P41440 591 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 HALP42357 657 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 UBE2IP63279 158 aaKnown RBP18.94■□□□□ 0.62
UPF1-209ENST00000600310 PLOD1Q02809 727 aaPredicted RBP18.94■□□□□ 0.62
UPF1-209ENST00000600310 KYNUQ16719 465 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 CAPRIN2Q6IMN6 1127 aaKnown RBP18.94■□□□□ 0.62
UPF1-209ENST00000600310 ZNF549Q6P9A3 640 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 SLC9B2Q86UD5 537 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 SLCO6A1Q86UG4 719 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 SLC26A11Q86WA9 606 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 IFI44Q8TCB0 444 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 CDKL2Q92772 493 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 WWP1Q9H0M0 922 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 OR52A5Q9H2C5 316 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 CCDC68Q9H2F9 335 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 ANKZF1Q9H8Y5 726 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 SARS2Q9NP81 518 aaKnown RBP18.94■□□□□ 0.62
UPF1-209ENST00000600310 SMYD2Q9NRG4 433 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 NSMCE4AQ9NXX6 385 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 NINJ2Q9NZG7 142 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 LRIT1Q9P2V4 623 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 CPNE7Q9UBL6 633 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 PSMD13Q9UNM6 376 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 APOBEC2Q9Y235 224 aaKnown RBP18.94■□□□□ 0.62
UPF1-209ENST00000600310 RNF215Q9Y6U7 377 aa18.94■□□□□ 0.62
UPF1-209ENST00000600310 ARHGEF17Q96PE2 2063 aaPredicted RBP18.94■□□□□ 0.62
UPF1-209ENST00000600310 FAM159BA6NKW6 160 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 KPNA5O15131 536 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 GPC4O75487 556 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 RFPL3O75679 317 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 SLC35G4P0C7Q5 338 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 FTH1P19P0C7X4 201 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 AOAHP28039 575 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 PDHA2P29803 388 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 STX2P32856 288 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 CD151P48509 253 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 BIRC2Q13490 618 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 BOP1Q14137 746 aaKnown RBP18.93■□□□□ 0.62
UPF1-209ENST00000600310 SLMAPQ14BN4 828 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 RPE65Q16518 533 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 PPM1JQ5JR12 505 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 PERM1Q5SV97 790 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.93■□□□□ 0.62
UPF1-209ENST00000600310 NAPRTQ6XQN6 538 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 ZNF438Q7Z4V0 828 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 SPDYE1Q8NFV5 336 aaPredicted RBP18.93■□□□□ 0.62
UPF1-209ENST00000600310 ASZ1Q8WWH4 475 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 CCDC74AQ96AQ1 378 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 TMEM159Q96B96 161 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 RMDN2Q96LZ7 410 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 AARSD1Q9BTE6 412 aaKnown RBP18.93■□□□□ 0.62
UPF1-209ENST00000600310 CDC42EP4Q9H3Q1 356 aaKnown RBP18.93■□□□□ 0.62
UPF1-209ENST00000600310 LATS2Q9NRM7 1088 aa18.93■□□□□ 0.62
UPF1-209ENST00000600310 OR52A4PA6NMU1 304 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 RHPN2P1A8MT19 583 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 PPM1DO15297 605 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 APOA4P06727 396 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 CDK4P11802 303 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 CHRM3P20309 590 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 PREPP48147 710 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 E2F1Q01094 437 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 HHEXQ03014 270 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 NR1D2Q14995 579 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 BRD3Q15059 726 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 SYTL3Q4VX76 610 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 OTOAQ7RTW8 1153 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 FBF1Q8TES7 1133 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 UBXN4Q92575 508 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 KCNJ9Q92806 393 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 SH3KBP1Q96B97 665 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 INSM2Q96T92 566 aaPredicted RBP18.92■□□□□ 0.62
UPF1-209ENST00000600310 STN1Q9H668 368 aaKnown RBP18.92■□□□□ 0.62
UPF1-209ENST00000600310 POT1Q9NUX5 634 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 KLHL42Q9P2K6 505 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 CORO1CQ9ULV4 474 aaPredicted RBP18.92■□□□□ 0.62
UPF1-209ENST00000600310 CDYLQ9Y232 598 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 MED16Q9Y2X0 877 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 PSAT1Q9Y617 370 aa18.92■□□□□ 0.62
UPF1-209ENST00000600310 ZFC3H1O60293 1989 aaKnown RBP18.92■□□□□ 0.62
UPF1-209ENST00000600310 CXorf49A8MYA2 514 aaPredicted RBP18.91■□□□□ 0.62
UPF1-209ENST00000600310 E5RI56 91 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 PIAS1O75925 651 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 SLCO2B1O94956 709 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 VIPP01282 170 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 FAM153BP0C7A2 387 aa18.91■□□□□ 0.62
UPF1-209ENST00000600310 MTHFD1P11586 935 aaKnown RBP18.91■□□□□ 0.62
UPF1-209ENST00000600310 KCNA4P22459 653 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms