RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PDCD4Q53EL6 469 aaKnown RBP20.21■□□□□ 0.83
UPF1-207ENST00000599848 ARHGAP40Q5TG30 622 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 NET1Q7Z628 596 aaPredicted RBP20.21■□□□□ 0.83
UPF1-207ENST00000599848 OR2AG1Q9H205 316 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 PTGES2Q9H7Z7 377 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 ABCG1P45844 678 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 LCP2Q13094 533 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 ZMIZ2Q8NF64 920 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 HMCESQ96FZ2 354 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 COX4I2Q96KJ9 171 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 TSSK3Q96PN8 268 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 SIRPGQ9P1W8 387 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 ARMCX1Q9P291 453 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 FADS2P1A8MWK0 482 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 CHP2O43745 196 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 ZNF662Q6ZS27 426 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 HIPK1Q86Z02 1210 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 GPALPP1Q8IXQ4 340 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 ZNF540Q8NDQ6 660 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 CKAP2Q8WWK9 683 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 ART4Q93070 314 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 PLGRKTQ9HBL7 147 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 LRCH1Q9Y2L9 728 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 TSC22D4Q9Y3Q8 395 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 LIN7AO14910 233 aaPredicted RBP20.2■□□□□ 0.82
UPF1-207ENST00000599848 PAPSS1O43252 624 aaPredicted RBP20.2■□□□□ 0.82
UPF1-207ENST00000599848 SOD2P04179 222 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 DSC2Q02487 901 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 DCST1Q5T197 706 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 SIDT2Q8NBJ9 832 aaKnown RBP20.2■□□□□ 0.82
UPF1-207ENST00000599848 SNX33Q8WV41 574 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 SMPDL3AQ92484 453 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 FOXJ1Q92949 421 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 FZD8Q9H461 694 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 RETREG1Q9H6L5 497 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 RIPK3Q9Y572 518 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 BCORL1Q5H9F3 1711 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 PLK4O00444 970 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 ZNF844Q08AG5 666 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 NEDD8Q15843 81 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 FAM214AQ32MH5 1076 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 CPSF7Q8N684 471 aaKnown RBP20.2■□□□□ 0.82
UPF1-207ENST00000599848 RAB7BQ96AH8 199 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 EIF2B3Q9NR50 452 aaKnown RBP20.2■□□□□ 0.82
UPF1-207ENST00000599848 B4GALT7Q9UBV7 327 aa20.2■□□□□ 0.82
UPF1-207ENST00000599848 ADAMDEC1O15204 470 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 SERPINA6P08185 405 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 CSNK2A2P19784 350 aaPredicted RBP20.19■□□□□ 0.82
UPF1-207ENST00000599848 AP1S2P56377 157 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 NELL2Q99435 816 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 ZDHHC3Q9NYG2 299 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 ZNF282Q9UDV7 671 aaPredicted RBP20.19■□□□□ 0.82
UPF1-207ENST00000599848 AGPSO00116 658 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 REM1O75628 298 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 FGF18O76093 207 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 CPNE9Q8IYJ1 553 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 C8orf48Q96LL4 319 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 EHD3Q9NZN3 535 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 PRR5-ARHGAP8B1AHC4 643 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 RGS20O76081 388 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 RPL17P18621 184 aaKnown RBP20.19■□□□□ 0.82
UPF1-207ENST00000599848 RPL7AP62424 266 aaKnown RBP20.19■□□□□ 0.82
UPF1-207ENST00000599848 GTF2H2Q13888 395 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 GTF2H2CQ6P1K8 395 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 ZDHHC12Q96GR4 267 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 PCDHB16Q9NRJ7 776 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 MOCS1Q9NZB8 636 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 PCDHAC2Q9Y5I4 1007 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 KLHL33A6NCF5 533 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 A6NCN8 305 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 SRRM3A6NNA2 597 aaPredicted RBP20.19■□□□□ 0.82
UPF1-207ENST00000599848 CSKP41240 450 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 GMFBP60983 142 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 RPL26P61254 145 aaKnown RBP20.19■□□□□ 0.82
UPF1-207ENST00000599848 EMC10Q5UCC4 262 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 FBXW8Q8N3Y1 598 aa20.19■□□□□ 0.82
UPF1-207ENST00000599848 RPL26L1Q9UNX3 145 aaKnown RBP20.19■□□□□ 0.82
UPF1-207ENST00000599848 UGT1A1P22309 533 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 UNQ6126/PRO20091Q6UXV3 157 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 LMX1AQ8TE12 382 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 KBTBD7Q8WVZ9 684 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 MFSD11O43934 449 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 AOC2O75106 756 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 PTP4A2Q12974 167 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 MTX3Q5HYI7 312 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 ACOT12Q8WYK0 555 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 SALL3Q9BXA9 1300 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 DHRS12A0PJE2 317 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 PLIN3O60664 434 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 HCN1O60741 890 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 CRISP3P54108 245 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 OR7A2PQ8NGA2 310 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 WDR60Q8WVS4 1066 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 SGCDQ92629 289 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 PMEPA1Q969W9 287 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 CREBZFQ9NS37 354 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 MRPS7Q9Y2R9 242 aaKnown RBP20.18■□□□□ 0.82
UPF1-207ENST00000599848 PLIN4Q96Q06 1357 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 MAPK10P53779 464 aa20.18■□□□□ 0.82
UPF1-207ENST00000599848 GJA9P57773 515 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms