RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PRMT5O14744 637 aaPredicted RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 NDUFS3O75489 264 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 TTC4O95801 387 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 PGAM1P18669 254 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 OGNP20774 298 aaKnown RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 LSSP48449 732 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 CD151P48509 253 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 ITGA8P53708 1063 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 PLOD1Q02809 727 aaPredicted RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 C2orf54Q08AI8 447 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 GPR18Q14330 331 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 HIF1AQ16665 826 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 TYSND1Q2T9J0 566 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 NKAIN2Q5VXU1 208 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 CAPRIN2Q6IMN6 1127 aaKnown RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 HIBCHQ6NVY1 386 aaPredicted RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 USP53Q70EK8 1073 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 SLITRK4Q8IW52 837 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 LILRA3Q8N6C8 439 aaPredicted RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 KDF1Q8NAX2 398 aaPredicted RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 BBOF1Q8ND07 529 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 WDR36Q8NI36 951 aaKnown RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 ZFPM2Q8WW38 1151 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 TMEM159Q96B96 161 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 C12orf66Q96MD2 445 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 FCRL3Q96P31 734 aaPredicted RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 NUDT22Q9BRQ3 303 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 TRIM56Q9BRZ2 755 aaKnown RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 ZMYND15Q9H091 742 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 POLR1BQ9H9Y6 1135 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 EPB41L5Q9HCM4 733 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 IMP3Q9NV31 184 aaKnown RBP11.64□□□□□ -0.55
LIG3-213ENST00000590630 VPS9D1Q9Y2B5 631 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 HEBP2Q9Y5Z4 205 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 GOLGA8KD6RF30 607 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 GOLGA8TH3BQL2 631 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 IFRD1O00458 451 aaPredicted RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 HGSO14964 777 aaPredicted RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 DXOO77932 396 aaKnown RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 URI1O94763 535 aaPredicted RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 UBXN7O94888 489 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 CAPNS1P04632 268 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 RPS3P23396 243 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIG3-213ENST00000590630 NDUFS1P28331 727 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 CSF2RBP32927 897 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 MLLT3P42568 568 aaPredicted RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 RPL21P46778 160 aaKnown RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 PPM1FP49593 454 aaPredicted RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 LIMK2P53671 638 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 ADARP55265 1226 aaKnown RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 GABREP78334 506 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 DHX9Q08211 1270 aaKnown RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 TRA2AQ13595 282 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIG3-213ENST00000590630 TUBB2AQ13885 445 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 LONRF1Q17RB8 773 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 WHAMMP3Q1A5X7 153 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 SYTL3Q4VX76 610 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 C3orf38Q5JPI3 329 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 PHF19Q5T6S3 580 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 NEPROQ6NW34 567 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 TMEM71Q6P5X7 295 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 IGF2-ASQ6U949 168 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 TMPRSS9Q7Z410 1059 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 LDB1Q86U70 411 aaPredicted RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 CILP2Q8IUL8 1156 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 LMNTD2Q8IXW0 634 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 LSMEM2Q8N112 164 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIG3-213ENST00000590630 SPDYE1Q8NFV5 336 aaPredicted RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 CALML6Q8TD86 181 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 ZCCHC14Q8WYQ9 949 aaKnown RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 ELMO1Q92556 727 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 ZNF592Q92610 1267 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 LRRC39Q96DD0 335 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 RMDN2Q96LZ7 410 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 PANX3Q96QZ0 392 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 INSM2Q96T92 566 aaPredicted RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 EBNA1BP2Q99848 306 aaKnown RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 ERP44Q9BS26 406 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 TUBB2BQ9BVA1 445 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 CARD6Q9BX69 1037 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 TBC1D10AQ9BXI6 508 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 TRIM31Q9BZY9 425 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 P2RY12Q9H244 342 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 OR52A5Q9H2C5 316 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 SEMA6CQ9H3T2 930 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 INTS10Q9NVR2 710 aaKnown RBP11.63□□□□□ -0.55
LIG3-213ENST00000590630 GNPTGQ9UJJ9 305 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 SATB2Q9UPW6 733 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 PCDHGA8Q9Y5G5 932 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 AK5Q9Y6K8 562 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 COLEC10Q9Y6Z7 277 aa11.63□□□□□ -0.55
LIG3-213ENST00000590630 URB1O60287 2271 aaKnown RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 IGHV5-10-1A0A0J9YXX1 117 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 UBA6A0AVT1 1052 aaPredicted RBP11.62□□□□□ -0.55
LIG3-213ENST00000590630 H3BMM5 538 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 PLD2O14939 933 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 TP73O15350 636 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 RAD51CO43502 376 aa11.62□□□□□ -0.55
LIG3-213ENST00000590630 ESR1P03372 595 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms