RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CES4AQ5XG92 561 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 STEAP4Q687X5 459 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 C16orf46Q6P387 395 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 CDHR3Q6ZTQ4 885 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 FRMD7Q6ZUT3 714 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 DENND5BQ6ZUT9 1274 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 CYS1Q717R9 158 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 RAB11FIP2Q7L804 512 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 EFL1Q7Z2Z2 1120 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 MIER3Q7Z3K6 550 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 MAVSQ7Z434 540 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 GPR141Q7Z602 305 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 AMIGO2Q86SJ2 522 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 DSG4Q86SJ6 1040 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 GPR180Q86V85 440 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TGIF2LYQ8IUE0 185 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PHC2Q8IXK0 858 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 C4orf19Q8IY42 314 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 IL22RA1Q8N6P7 574 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PACRGLQ8N7B6 248 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 POU5F2Q8N7G0 328 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PPM1NQ8N819 430 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PDPRQ8NCN5 879 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TMEM35BQ8NCS4 154 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TMEM161BQ8NDZ6 487 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 MCUQ8NE86 351 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 RDM1Q8NG50 284 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 OR4C6Q8NH72 309 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 DEPTORQ8TB45 409 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ADAMTS16Q8TE57 1224 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TFB1MQ8WVM0 346 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 KBTBD7Q8WVZ9 684 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 APOBEC4Q8WW27 367 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 CPA5Q8WXQ8 436 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ISOC1Q96CN7 298 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 HDAC11Q96DB2 347 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 HSPBAP1Q96EW2 488 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 DUS3LQ96G46 650 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 RMND5BQ96G75 393 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 CEP170P1Q96L14 293 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 MCEEQ96PE7 176 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 RANBP9Q96S59 729 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 CGREF1Q99674 301 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 CGRRF1Q99675 332 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 DOK1Q99704 481 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 SMR3AQ99954 134 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 EBF4Q9BQW3 602 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ORAI3Q9BRQ5 295 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TCHPQ9BT92 498 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 MECRQ9BV79 373 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 BTBD1Q9H0C5 482 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PDZD7Q9H5P4 517 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ZNF385DQ9H6B1 395 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 RMI1Q9H9A7 625 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PFDN4Q9NQP4 134 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 INIPQ9NRY2 104 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TOPORSQ9NS56 1045 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 ANKEF1Q9NU02 776 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ABI2Q9NYB9 513 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 FOXJ2Q9P0K8 574 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ARHGAP28Q9P2N2 729 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 MARCOQ9UEW3 520 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 IPO11Q9UI26 975 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 TMEM98Q9Y2Y6 226 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 COQ6Q9Y2Z9 468 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 FAM32AQ9Y421 112 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 AP4S1Q9Y587 144 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 STON1Q9Y6Q2 735 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ZNF638Q14966 1978 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 SMIM28A0A1B0GU29 152 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 A0A1W2PPC4 97 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TCRBV7S3A2A0A539 114 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 FUOMA2VDF0 154 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ZNF891A8MT65 544 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 KPNA7A9QM74 516 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 PRRT4C9JH25 899 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TLR4O00206 839 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 PIK3R2O00459 728 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ZNF195O14628 629 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 SLC9A3R1O14745 358 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 SLC16A4O15374 487 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 MAGEB3O15480 346 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 LZTS3O60299 673 aaPredicted RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 PLIN3O60664 434 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CST8O60676 142 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ZG16O60844 167 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 CNOT3O75175 753 aaKnown RBP4.11□□□□□ -1.75
LIG3-211ENST00000588713 LRCH4O75427 683 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 TOM1L1O75674 476 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 OAZ2O95190 189 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 VAPBO95292 243 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 IGLV3-19P01714 112 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 PIGRP01833 764 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 HLA-DRAP01903 254 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 IGHV4-34P06331 123 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 APOA4P06727 396 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 INHBBP09529 407 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 ALOX5P09917 674 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 OCM2P0CE71 109 aa4.11□□□□□ -1.75
LIG3-211ENST00000588713 OCMP0CE72 109 aaPredicted RBP4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms