RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 KLHDC8BQ8IXV7 354 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 PRG4Q92954 1404 aaPredicted RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 MOAP1Q96BY2 351 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 ZNF524Q96C55 264 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 TIGD1Q96MW7 591 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 PPIL3Q9H2H8 161 aaKnown RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 HRH4Q9H3N8 390 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 UPF2Q9HAU5 1272 aaKnown RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 FAM118AQ9NWS6 357 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 MAP3K20Q9NYL2 800 aaKnown RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 WSB2Q9NYS7 404 aaPredicted RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 GAGE2DQ9UEU5 116 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 TBC1D29Q9UFV1 150 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 PLB1Q6P1J6 1458 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 CDK13Q14004 1512 aaKnown RBP4.92□□□□□ -1.62
NUP88-213ENST00000576862 MAGI3Q5TCQ9 1506 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 SYNCRIPO60506 623 aaKnown RBP4.92□□□□□ -1.62
NUP88-213ENST00000576862 AMBPP02760 352 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 WDR38Q5JTN6 314 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 PLEKHS1Q5SXH7 462 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 NDUFAF5Q5TEU4 345 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 TBC1D16Q8TBP0 767 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 ZNF501Q96CX3 271 aaPredicted RBP4.92□□□□□ -1.62
NUP88-213ENST00000576862 ZNF354BQ96LW1 612 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 CEP295NLQ96MC4 621 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 SLA2Q9H6Q3 261 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 HAUS2Q9NVX0 235 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 PCDHGA5Q9Y5G8 931 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 NCOA2Q15596 1464 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 CCDC18Q5T9S5 1454 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 CFAP43Q8NDM7 1665 aa4.92□□□□□ -1.62
NUP88-213ENST00000576862 FGD6Q6ZV73 1430 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 A0A1W2PQ09 198 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 LNP1A1A4G5 178 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 OR2A25A4D2G3 310 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 C15orf62A8K5M9 175 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 FAM72CH0Y354 149 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 H0YIN7 160 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 NDUFS4O43181 175 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 PRSS1P07477 247 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 MSH3P20585 1137 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 COPB2P35606 906 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 CDKN1AP38936 164 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 SLC15A1P46059 708 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 CXCL9Q07325 125 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 DUOXA1Q1HG43 343 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 TECRLQ5HYJ1 363 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 FAM72AQ5TYM5 149 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 ITPRIPL1Q6GPH6 555 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 FAM72DQ6L9T8 149 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 SLC27A1Q6PCB7 646 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 GALNT5Q7Z7M9 940 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 FAM72BQ86X60 149 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 RPAP2Q8IXW5 612 aaPredicted RBP4.91□□□□□ -1.62
NUP88-213ENST00000576862 FCAMRQ8WWV6 532 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 SEMA4DQ92854 862 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 NSUN4Q96CB9 384 aaKnown RBP4.91□□□□□ -1.62
NUP88-213ENST00000576862 SAT2Q96F10 170 aaPredicted RBP4.91□□□□□ -1.62
NUP88-213ENST00000576862 ZNF582Q96NG8 517 aaPredicted RBP4.91□□□□□ -1.62
NUP88-213ENST00000576862 SDF4Q9BRK5 362 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 DENND2DQ9H6A0 471 aaPredicted RBP4.91□□□□□ -1.62
NUP88-213ENST00000576862 APOBEC3GQ9HC16 384 aaKnown RBP4.91□□□□□ -1.62
NUP88-213ENST00000576862 VPS28Q9UK41 221 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 PLAGL1Q9UM63 463 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 GAB2Q9UQC2 676 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 TCF19Q9Y242 345 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 ARHGEF11O15085 1522 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 CLSPNQ9HAW4 1339 aa4.91□□□□□ -1.62
NUP88-213ENST00000576862 HECW1Q76N89 1606 aa4.9□□□□□ -1.62
NUP88-213ENST00000576862 PTPRGP23470 1445 aa4.9□□□□□ -1.62
NUP88-213ENST00000576862 MYOM3Q5VTT5 1437 aa4.9□□□□□ -1.62
NUP88-213ENST00000576862 SOCS5O75159 536 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 PAK4O96013 591 aaPredicted RBP4.9□□□□□ -1.63
NUP88-213ENST00000576862 NAP1L1P55209 391 aaKnown RBP4.9□□□□□ -1.63
NUP88-213ENST00000576862 POU5F1Q01860 360 aaKnown RBP4.9□□□□□ -1.63
NUP88-213ENST00000576862 PRKAA1Q13131 559 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 MZT2BQ6NZ67 158 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 DGLUCYQ7Z3D6 616 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 C1orf131Q8NDD1 294 aaKnown RBP4.9□□□□□ -1.63
NUP88-213ENST00000576862 ZNF473Q8WTR7 871 aaKnown RBP4.9□□□□□ -1.63
NUP88-213ENST00000576862 STAMBPL1Q96FJ0 436 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 CCDC34Q96HJ3 373 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 ADD3Q9UEY8 706 aaKnown RBP4.9□□□□□ -1.63
NUP88-213ENST00000576862 AMACRQ9UHK6 382 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 ACAD8Q9UKU7 415 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 EHBP1L1Q8N3D4 1523 aa4.9□□□□□ -1.63
NUP88-213ENST00000576862 ASTN2O75129 1339 aaPredicted RBP4.9□□□□□ -1.63
NUP88-213ENST00000576862 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.9□□□□□ -1.63
NUP88-213ENST00000576862 PTPRKQ15262 1439 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 ANKRD18BA2A2Z9 1011 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 LRRC72A6NJI9 287 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 PMS2P5A8MQ11 134 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 B4DLN1 442 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 CTDSP2O14595 271 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 ZNF500O60304 480 aaPredicted RBP4.89□□□□□ -1.63
NUP88-213ENST00000576862 TSHBP01222 138 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 CBLP22681 906 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 GCH1P30793 250 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 NR2C2P49116 596 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 MRPL12P52815 198 aaKnown RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms