RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 LACTB2Q53H82 288 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 SGO1Q5FBB7 561 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 C10orf120Q5SQS8 335 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PRAMEF20Q5VT98 475 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 ANKRD16Q6P6B7 361 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 ZCCHC12Q6PEW1 402 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 FBXO38Q6PIJ6 1188 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 SLC22A25Q6T423 547 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 ZNF788Q6ZQV5 615 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 TRPM8Q7Z2W7 1104 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 MIER3Q7Z3K6 550 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 YTHDF3Q7Z739 585 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 NEK8Q86SG6 692 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 GLRX5Q86SX6 157 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 ITIH5Q86UX2 942 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 MON1AQ86VX9 555 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PALB2Q86YC2 1186 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 RASAL3Q86YV0 1011 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 TBC1D10CQ8IV04 446 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 FAM217AQ8IXS0 508 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 SRRM1Q8IYB3 904 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 SLC38A6Q8IZM9 456 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 LINC00518Q8N0U6 118 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 TAGAPQ8N103 731 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 CRYBG2Q8N1P7 616 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 ZCCHC7Q8N3Z6 543 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 RTL3Q8N8U3 475 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 SNX31Q8N9S9 440 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 SPATA4Q8NEY3 305 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 OR5T1Q8NG75 326 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 KBTBD7Q8WVZ9 684 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PRCCQ92733 491 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 TNFRSF14Q92956 283 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PDLIM5Q96HC4 596 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 ELMO2Q96JJ3 720 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 RBM4BQ9BQ04 359 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 PYM1Q9BRP8 204 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 RBM4Q9BWF3 364 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 SF3B5Q9BWJ5 86 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 HDHD2Q9H0R4 259 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 LRMDAQ9H2I8 198 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 EPS8L2Q9H6S3 715 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 LRRC40Q9H9A6 602 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 ACTR5Q9H9F9 607 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 MRPS30Q9NP92 439 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 DECR2Q9NUI1 292 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 DNAJC11Q9NVH1 559 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 FAIMQ9NVQ4 179 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 HYPKQ9NX55 129 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 LRFN1Q9P244 771 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PSMC3IPQ9P2W1 217 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 SPASTQ9UBP0 616 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 MORF4L1Q9UBU8 362 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 CNOT7Q9UIV1 285 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 PCDHA7Q9UN72 937 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PCDHGB2Q9Y5G2 931 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 CLCA3PQ9Y6N3 262 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 OR6C70A6NIJ9 312 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 PCP4L1A6NKN8 68 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 C2orf74A8MZ97 194 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 KBTBD13C9JR72 458 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 GPR171O14626 319 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 MEIS2O14770 477 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 GCATO75600 419 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 GJB3O75712 270 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 RASSF9O75901 435 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 PDE5AO76074 875 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 CYC1P08574 325 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 KRT16P08779 473 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 ARP10275 920 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 GFAPP14136 432 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 FDPSP14324 419 aaKnown RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 GNSP15586 552 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 CKMT2P17540 419 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 TCN1P20061 433 aaPredicted RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 DRD4P21917 467 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 AHCYP23526 432 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 GSTM2P28161 218 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 SHMT1P34896 483 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 NUDT1P36639 197 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 SPAM1P38567 509 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 SLC11A2P49281 568 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 STAT2P52630 851 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 UCP3P55916 312 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 POLE2P56282 527 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 YWHAEP62258 255 aaKnown RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 PRAMEP78395 509 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 RHAGQ02094 409 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 GAD2Q05329 585 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 FCHO2Q0JRZ9 810 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 FASTKD3Q14CZ7 662 aaKnown RBP5.04□□□□□ -1.6
VPS35-205ENST00000563984 PDK1Q15118 436 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 KYAT1Q16773 422 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 P3H1Q32P28 736 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 TBRG1Q3YBR2 411 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 CMPK2Q5EBM0 449 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 TCP11X2Q5H9J9 407 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 GLRA4Q5JXX5 417 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 HES5Q5TA89 166 aa5.04□□□□□ -1.6
VPS35-205ENST00000563984 ARHGAP17Q68EM7 881 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms