RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TPSB2P20231 275 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 ADRA1BP35368 520 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 GRK3P35626 688 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 LBX1P52954 281 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 SEMA5AQ13591 1074 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 SQLEQ14534 574 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 TPSAB1Q15661 275 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 LAIR2Q6ISS4 152 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 LCN8Q6JVE9 175 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 BHLHA9Q7RTU4 235 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 KCTD20Q7Z5Y7 419 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 STRA8Q7Z7C7 330 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 CCNYQ8ND76 341 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 GTF2H4Q92759 462 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 RNF170Q96K19 258 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 ZNF300Q96RE9 604 aaPredicted RBP13.12□□□□□ -0.31
CLK3-206ENST00000562078 TMEM209Q96SK2 561 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 EXD2Q9NVH0 621 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 TMLHEQ9NVH6 421 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 SCN5AQ14524 2016 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 COL4A4P53420 1690 aaPredicted RBP13.12□□□□□ -0.31
CLK3-206ENST00000562078 SAGE2PA6NJ88 616 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 SEMA3DO95025 777 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 LDLRP01130 860 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 BMP1P13497 986 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 SAT1P21673 171 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 MAP2K4P45985 399 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 TPD52P55327 224 aaPredicted RBP13.12□□□□□ -0.31
CLK3-206ENST00000562078 SNTA1Q13424 505 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 TBRG1Q3YBR2 411 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 TXNDC11Q6PKC3 985 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 P2RY8Q86VZ1 359 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 IFNEQ86WN2 208 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 METTL23Q86XA0 190 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 OR10T2Q8NGX3 314 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 LILRB1Q8NHL6 650 aaPredicted RBP13.12□□□□□ -0.31
CLK3-206ENST00000562078 P2RY11Q96G91 374 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 SLC39A13Q96H72 371 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 ASB2Q96Q27 587 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 RBBP8Q99708 897 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 SLC30A3Q99726 388 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 SLC25A23Q9BV35 468 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 ACAT2Q9BWD1 397 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 C6orf62Q9GZU0 229 aaPredicted RBP13.12□□□□□ -0.31
CLK3-206ENST00000562078 PRDM12Q9H4Q4 367 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 ACOXLQ9NUZ1 547 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 GTSE1Q9NYZ3 720 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 NPAP1Q9NZP6 1156 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 OPTCQ9UBM4 332 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 ZNF639Q9UID6 485 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 KRT87PA6NCN2 255 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 PABPN1LA6NDY0 278 aaKnown RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 AGAP5A6NIR3 686 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 C9JVG2 144 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 CTDSP2O14595 271 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 CPNE3O75131 537 aaKnown RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 FCGR1AP12314 374 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 HNRNPLP14866 589 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLK3-206ENST00000562078 ITGB6P18564 788 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 UQCRC1P31930 480 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 GGT5P36269 586 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 DDOSTP39656 456 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 AP2S1P53680 142 aaPredicted RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 ARSFP54793 590 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 TARDBPQ13148 414 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLK3-206ENST00000562078 TUSC3Q13454 348 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 INTS6LQ5JSJ4 861 aaKnown RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 GRTP1Q5TC63 336 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 CD300LGQ6UXG3 332 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 SLC39A5Q6ZMH5 540 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 RBM23Q86U06 439 aaKnown RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 COLGALT1Q8NBJ5 622 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 SCYL1Q96KG9 808 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 ZSCAN5AQ9BUG6 496 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 CRISPLD2Q9H0B8 497 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 TOR3AQ9H497 397 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 RGS18Q9NS28 235 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 SYBUQ9NX95 663 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 ACTR3BQ9P1U1 418 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 WBP11Q9Y2W2 641 aaKnown RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 DCLK1O15075 740 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 THRBP10828 461 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 ICAM2P13598 275 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 PGAM1P18669 254 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 ATF4P18848 351 aaPredicted RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 PIGAP37287 484 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 TPI1P60174 286 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 PAFAH1B3Q15102 231 aaKnown RBP13.11□□□□□ -0.31
CLK3-206ENST00000562078 OVOS1Q6IE37 1185 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 PLD3Q8IV08 490 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 CLEC4FQ8N1N0 589 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 ISL2Q96A47 359 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 NTAN1Q96AB6 310 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 ELMO2Q96JJ3 720 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 SLC9A7Q96T83 725 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 CPNE1Q99829 537 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 ACBD6Q9BR61 282 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 CSNK1G1Q9HCP0 422 aa13.11□□□□□ -0.31
CLK3-206ENST00000562078 NDFIP2Q9NV92 336 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms