RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 UBXN4Q92575 508 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 C12orf66Q96MD2 445 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 FAM118BQ9BPY3 351 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 ANP32EQ9BTT0 268 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 TWSG1Q9GZX9 223 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 GBA3Q9H227 469 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 PDE7BQ9NP56 450 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 FGF21Q9NSA1 209 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 SMOXQ9NWM0 555 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.36□□□□□ -0.595e-13■■■■■ 52.5
USP3-220ENST00000561381 FKBPLQ9UIM3 349 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 KCND3Q9UK17 655 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 TRHDEQ9UKU6 1024 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 POLHQ9Y253 713 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 PLAAQ9Y263 795 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 DNMT3AQ9Y6K1 912 aaPredicted RBP11.36□□□□□ -0.59
USP3-220ENST00000561381 PTPN13Q12923 2485 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 SPTBP11277 2137 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 UBR5O95071 2799 aaPredicted RBP11.36□□□□□ -0.59
USP3-220ENST00000561381 RELNP78509 3460 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 OR6C74A6NCV1 312 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 OR5K3A6NET4 321 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 MGAT4DA6NG13 374 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 APOC4-APOC2K7ER74 178 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 CCL22O00626 93 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 SRP72O76094 671 aaKnown RBP11.35□□□□□ -0.59
USP3-220ENST00000561381 APOC2P02655 101 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 PDGFAP04085 211 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 POLBP06746 335 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 LPOP22079 712 aaPredicted RBP11.35□□□□□ -0.59
USP3-220ENST00000561381 PSMB4P28070 264 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 ADRA1AP35348 466 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 KPNA2P52292 529 aaKnown RBP11.35□□□□□ -0.59
USP3-220ENST00000561381 GEMP55040 296 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 TMPRSS15P98073 1019 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 XIAPP98170 497 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 SRSF1Q07955 248 aaKnown RBP eCLIP11.35□□□□□ -0.59
USP3-220ENST00000561381 MSLNQ13421 630 aaPredicted RBP11.35□□□□□ -0.59
USP3-220ENST00000561381 TAF1AQ15573 450 aaPredicted RBP11.35□□□□□ -0.59
USP3-220ENST00000561381 GPR19Q15760 415 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 DNTTIP2Q5QJE6 756 aaKnown RBP11.35□□□□□ -0.59
USP3-220ENST00000561381 PRAMEF17Q5VTA0 474 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 C11orf63Q6NUN7 778 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 KLHL35Q6PF15 583 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 RANBP10Q6VN20 620 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 D2HGDHQ8N465 521 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 OR13C4Q8NGS5 318 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 OR2L2Q8NH16 312 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 ACTL9Q8TC94 416 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 RBM41Q96IZ5 413 aaKnown RBP11.35□□□□□ -0.59
USP3-220ENST00000561381 ZNF514Q96K75 400 aaPredicted RBP11.35□□□□□ -0.59
USP3-220ENST00000561381 RMDN2Q96LZ7 410 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 NRTNQ99748 197 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 TRIM55Q9BYV6 548 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 ACTL8Q9H568 366 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 FAM96AQ9H5X1 160 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 ASB8Q9H765 288 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 HRASLS2Q9NWW9 162 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 SLC24A2Q9UI40 661 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 TLK1Q9UKI8 766 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 PCDHGA6Q9Y5G7 932 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 PCDHA13Q9Y5I0 950 aa11.35□□□□□ -0.59
USP3-220ENST00000561381 UBA6A0AVT1 1052 aaPredicted RBP11.34□□□□□ -0.59
USP3-220ENST00000561381 MACROD2A1Z1Q3 448 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 RCCD1A6NED2 376 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 TLCD2A6NGC4 264 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 C2orf81A6NN90 581 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 C21orf140B9A014 251 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 MKRN2OSH3BPM6 223 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 RFPL1O75677 317 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 ANXA9O76027 345 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 LCA5LO95447 670 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 MT-ND3P03897 115 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 ARL4DP49703 201 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 PMS2P54278 862 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 HSD11B2P80365 405 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 OTUD4Q01804 1114 aaKnown RBP11.34□□□□□ -0.59
USP3-220ENST00000561381 ACY1Q03154 408 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 KLRB1Q12918 225 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 SPARCL1Q14515 664 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 BCL7AQ4VC05 210 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 CCDC181Q5TID7 509 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 TCTN3Q6NUS6 607 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 AADACL2Q6P093 401 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 ASB18Q6ZVZ8 466 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 OOSP2Q86WS3 158 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 KMT5CQ86Y97 462 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 CFAP206Q8IYR0 622 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 SLC38A9Q8NBW4 561 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 CCDC110Q8TBZ0 833 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 CD180Q99467 661 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 KIR3DX1Q9H7L2 352 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 NPDC1Q9NQX5 325 aaPredicted RBP11.34□□□□□ -0.59
USP3-220ENST00000561381 MAN2B2Q9Y2E5 1009 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 MED13Q9UHV7 2174 aa11.34□□□□□ -0.59
USP3-220ENST00000561381 TNRC6AQ8NDV7 1962 aaKnown RBP11.34□□□□□ -0.59
USP3-220ENST00000561381 NAV2Q8IVL1 2488 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 C5orf60A6NFR6 353 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 KCNN4O15554 427 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 PJA2O43164 708 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms