RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CCR3P51677 355 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 PRKAA2P54646 552 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CLDN2P57739 230 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GSTM4Q03013 218 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 BST1Q10588 318 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 STX3Q13277 289 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 SYTL3Q4VX76 610 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 LIPMQ5VYY2 423 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CES4AQ5XG92 561 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CWF19L1Q69YN2 538 aaKnown RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 CRTC3Q6UUV7 619 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 MAMSTRQ6ZN01 415 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 FAM47EQ6ZV65 393 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 VRK3Q8IV63 474 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 PARP9Q8IXQ6 854 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 FAM160A2Q8N612 972 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 OR6Y1Q8NGX8 325 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 N4BP2L2Q92802 583 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 EXT2Q93063 718 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 BIRC7Q96CA5 298 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CCDC126Q96EE4 140 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 BMFQ96LC9 184 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CCT8L2Q96SF2 557 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 FAM126AQ9BYI3 521 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 SLCO1B3Q9NPD5 702 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 FGFR1OP2Q9NVK5 253 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 DLGAP2Q9P1A6 1054 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 FAM8A1Q9UBU6 413 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CA5BQ9Y2D0 317 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 PCYT1BQ9Y5K3 369 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 TRPM6Q9BX84 2022 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 C17orf113A0A1B0GUU1 675 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 SLC5A10A0PJK1 596 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 SYCE1LA8MT33 242 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 A8MT66 165 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 K7ESF4 209 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 UBXN8O00124 270 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GRID2O43424 1007 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 EDF1O60869 148 aaKnown RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 SMIM24O75264 130 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 H2AFYO75367 372 aaKnown RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 IPO13O94829 963 aaKnown RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 SLCO2B1O94956 709 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 MPC1LP0DKB6 136 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 MTHFD2P13995 350 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 DRD4P21917 467 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GRK2P25098 689 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 PBLDP30039 288 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 DNAJB13P59910 316 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 ASPHQ12797 758 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 C11orf91Q3C1V1 193 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 ZNF658BQ4V348 819 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 SBSNQ6UWP8 590 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 NEK10Q6ZWH5 1172 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CPLX4Q7Z7G2 160 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 C11orf96Q7Z7L8 435 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 ADAMTSL2Q86TH1 951 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 LRRTM4Q86VH4 590 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GPSM1Q86YR5 675 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 SLC22A9Q8IVM8 553 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GLMNQ92990 594 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 TMEM159Q96B96 161 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GATA5Q9BWX5 397 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 PITPNM3Q9BZ71 974 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CYP4F12Q9HCS2 524 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 SLC40A1Q9NP59 571 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GULP1Q9UBP9 304 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 DMTF1Q9Y222 760 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 SLC17A4Q9Y2C5 497 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 PRKAB1Q9Y478 270 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 HS3ST3A1Q9Y663 406 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 DNMT3AQ9Y6K1 912 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 MGAT4DA6NG13 374 aa11□□□□□ -0.65
USP3-218ENST00000560202 SUPT3HB4E1H0 165 aa11□□□□□ -0.65
USP3-218ENST00000560202 PRAMEF26H0Y7S4 382 aa11□□□□□ -0.65
USP3-218ENST00000560202 H0Y8X5 98 aa11□□□□□ -0.65
USP3-218ENST00000560202 LIN7AO14910 233 aaPredicted RBP11□□□□□ -0.65
USP3-218ENST00000560202 NDUFS2O75306 463 aa11□□□□□ -0.65
USP3-218ENST00000560202 SNNO75324 88 aaPredicted RBP11□□□□□ -0.65
USP3-218ENST00000560202 SUPT3HO75486 399 aa11□□□□□ -0.65
USP3-218ENST00000560202 CEACAM5P06731 702 aa11□□□□□ -0.65
USP3-218ENST00000560202 NUDT1P36639 197 aa11□□□□□ -0.65
USP3-218ENST00000560202 NAGLUP54802 743 aa11□□□□□ -0.65
USP3-218ENST00000560202 KIAA1024LP59773 190 aa11□□□□□ -0.65
USP3-218ENST00000560202 PFN3P60673 137 aa11□□□□□ -0.65
USP3-218ENST00000560202 ARHGAP8P85298 464 aa11□□□□□ -0.65
USP3-218ENST00000560202 NFKB2Q00653 900 aa11□□□□□ -0.65
USP3-218ENST00000560202 PPP1R3AQ16821 1122 aa11□□□□□ -0.65
USP3-218ENST00000560202 PLA2G4EQ3MJ16 856 aa11□□□□□ -0.65
USP3-218ENST00000560202 TJAP1Q5JTD0 557 aa11□□□□□ -0.65
USP3-218ENST00000560202 GCNT7Q6ZNI0 430 aa11□□□□□ -0.65
USP3-218ENST00000560202 FRA10AC1Q70Z53 315 aa11□□□□□ -0.65
USP3-218ENST00000560202 CFAP206Q8IYR0 622 aa11□□□□□ -0.65
USP3-218ENST00000560202 LILRA3Q8N6C8 439 aaPredicted RBP11□□□□□ -0.65
USP3-218ENST00000560202 PTGR2Q8N8N7 351 aaPredicted RBP11□□□□□ -0.65
USP3-218ENST00000560202 TMEM145Q8NBT3 493 aa11□□□□□ -0.65
USP3-218ENST00000560202 OR2L2Q8NH16 312 aa11□□□□□ -0.65
USP3-218ENST00000560202 HM13Q8TCT9 377 aa11□□□□□ -0.65
USP3-218ENST00000560202 SKA2Q8WVK7 121 aaPredicted RBP11□□□□□ -0.65
USP3-218ENST00000560202 PHF21BQ96EK2 531 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms