RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TRAF3Q13114 568 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 SELENBP1Q13228 472 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 GPR153Q6NV75 609 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 CYP20A1Q6UW02 462 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 PLEKHG7Q6ZR37 379 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 APOBEC3FQ8IUX4 373 aaKnown RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 LPCAT1Q8NF37 534 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 PROKR1Q8TCW9 393 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 NTAN1Q96AB6 310 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 KCNS3Q9BQ31 491 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 CHCHD6Q9BRQ6 235 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 DPY30Q9C005 99 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 RNF38Q9H0F5 515 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 IKZF5Q9H5V7 419 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 FARSBQ9NSD9 589 aaKnown RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 TMLHEQ9NVH6 421 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 ABCD2Q9UBJ2 740 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 NINQ8N4C6 2090 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 A0A1W2PQH9 124 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 TCRBV5S2A0A599 114 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 SMIM30A4D0T7 59 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 CAPNS1P04632 268 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 MTHFD2P13995 350 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 OR1E1P30953 314 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 PSMD8P48556 350 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 SEMA3BQ13214 749 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 SNX17Q15036 470 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 TAB1Q15750 504 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 CPSF6Q16630 551 aaKnown RBP eCLIP11.17□□□□□ -0.62
LDLR-208ENST00000558518 PHKG1Q16816 387 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 ZNF598Q86UK7 904 aaKnown RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 P3H2Q8IVL5 708 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 MCMBPQ9BTE3 642 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 UGT2B28Q9BY64 529 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 MRGBPQ9NV56 204 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 IL37Q9NZH6 218 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 GMIPQ9P107 970 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 MAGEL2Q9UJ55 1249 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 NOX1Q9Y5S8 564 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 DYTNA2CJ06 578 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 EFCAB9A8MZ26 197 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 DARSP14868 501 aaKnown RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 GSTM2P28161 218 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 GPR15P49685 360 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 RPS3AP61247 264 aaKnown RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 UBE3AQ05086 875 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 DDX39BQ13838 428 aaKnown RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 ZBTB6Q15916 424 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 OR52J3Q8NH60 311 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 UTP15Q8TED0 518 aaKnown RBP11.17□□□□□ -0.62
LDLR-208ENST00000558518 NT5C3BQ969T7 300 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 NACA2Q9H009 215 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 TMED5Q9Y3A6 229 aa11.17□□□□□ -0.62
LDLR-208ENST00000558518 SOBPA7XYQ1 873 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 CXCR6O00574 342 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 NTRK1P04629 796 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 SMIM10L2AP0DMW4 78 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 SMIM10L2BP0DMW5 78 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 SPNP16150 400 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 S100A5P33763 92 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 TWF1Q12792 350 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 TSTA3Q13630 321 aaPredicted RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 DMC1Q14565 340 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.16□□□□□ -0.62
LDLR-208ENST00000558518 HACD2Q6Y1H2 254 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 SLC16A12Q6ZSM3 486 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 HORMAD1Q86X24 394 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 RASAL3Q86YV0 1011 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 OR56A4Q8NGH8 313 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 OR52E6Q96RD3 313 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 SLC9A7Q96T83 725 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 ZBED2Q9BTP6 218 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 DCSTAMPQ9H295 470 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 LATS2Q9NRM7 1088 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 AIG1Q9NVV5 245 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 ENPP5Q9UJA9 477 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 PKP3Q9Y446 797 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 PCDHGC4Q9Y5F7 938 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 HS3ST4Q9Y661 456 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 DNMT3AQ9Y6K1 912 aaPredicted RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 NFKBIEO00221 500 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 IDH3BO43837 385 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 CPSF4O95639 269 aaKnown RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 COL6A1P12109 1028 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 POU2F1P14859 743 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 ARHGDIAP52565 204 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 TIGD5Q53EQ6 642 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 TIGD7Q6NT04 549 aaPredicted RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 LETMD1Q6P1Q0 360 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 GLT6D1Q7Z4J2 308 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 PROSER1Q86XN7 944 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 ARMC8Q8IUR7 673 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 SPATA2LQ8IUW3 424 aaPredicted RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 CNTN4Q8IWV2 1026 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 PROX1Q92786 737 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 LGALS12Q96DT0 336 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 TDRD1Q9BXT4 1180 aaKnown RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 MROQ9BYG7 248 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 TLR9Q9NR96 1032 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms